Publications

2023

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Effects of Processing‐Induced Contamination on Organic Electronic Devices
Authors: D Simatos, IE Jacobs, I Dobryden, M Nguyen, A Savva, ...
Journal: Small Methods

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Targeting nucleic acid phase transitions as a mechanism of action for antimicrobial peptides
Authors: T Sneideris, NA Erkamp, H Ausserwöger, KL Saar, TJ Welsh, D Qian, ...
Journal: Nature Communications 14 (1)

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Linking modulation of bio-molecular phase behaviour with collective interactions
Authors: D Qian, H Ausserwoger, WE Arter, R Scrutton, TJ Welsh, T Kartanas, ...
Journal: bioRxiv

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Droplet dynamics in asymmetric microfluidic junctions
Authors: H Yang, Y Xu, T Knowles
Journal: European Journal of Mechanics-B/Fluids 102

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Electrophysiological In Vitro Study of Long‐Range Signal Transmission by Astrocytic Networks
Authors: N Hastings, YL Yu, B Huang, S Middya, M Inaoka, NA Erkamp, RJ Mason, ...
Journal: Advanced Science 10 (29)

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Pharmacological inhibition of α-synuclein aggregation within liquid condensates
Authors: M Vendruscolo, S Dada, Z Toprakcioglu, M Hardenberg, M Cali, ...
Journal: 

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Effects of Processing‐Induced Contamination on Organic Electronic Devices
Authors: M Nguyen, S Ursel, J Armitage, W Zhang, D Simatos, IE Jacobs, ...
Journal: 

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Thermodynamic profiles for co-translational trigger factor function
Authors: TW Herling, AME Cassaignau, AS Wentink, QAE Peter, PC Kumar, ...
Journal: bioRxiv

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Research data supporting" Effects of processing-induced contamination on organic electronic devices"
Authors: D Simatos, I Jacobs, I Dobryden, M Nguyen, A Savva, D Venkateshvaran, ...
Journal: 

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The liquid-to-solid transition of FUS is promoted by the condensate surface
Authors: Y Shen, A Chen, W Wang, Y Shen, FS Ruggeri, S Aime, Z Wang, S Qamar, ...
Journal: Proceedings of the National Academy of Sciences 120 (33)

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Single-molecule digital sizing of proteins in solution
Authors: G Krainer, RPB Jacquat, MM Schneider, TJ Welsh, J Fan, QAE Peter, ...
Journal: bioRxiv

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Amyloid formation as a protein phase transition
Authors: TCT Michaels, D Qian, A Šarić, M Vendruscolo, S Linse, TPJ Knowles
Journal: Nature Reviews Physics 5 (7)

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Positional influence on cellular transcriptional identity revealed through spatially segmented single-cell transcriptomics
Authors: DB Morse, AM Michalowski, M Ceribelli, J De Jonghe, M Vias, D Riley, ...
Journal: Cell Systems 14 (6)

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Dominance metric in multi-component binary phase equilibria
Authors: D Qian, H Ausserwoger, T Sneideris, RV Pappu, T Knowles
Journal: bioRxiv

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Formation of Protein Nanoparticles in Microdroplet Flow Reactors
Authors: Q Zhang, Z Toprakcioglu, AK Jayaram, G Guo, X Wang, TPJ Knowles
Journal: ACS nano

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De Novo Human Angiotensin-Converting Enzyme 2 Decoy NL-CVX1 Protects Mice From Severe Disease After Severe Acute Respiratory Syndrome Coronavirus 2 Infection
Authors: M Rebelo, C Tang, AR Coelho, C Labão-Almeida, MM Schneider, ...
Journal: The Journal of Infectious Diseases

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Quantifying collective interactions in biomolecular phase separation
Authors: H Ausserwöger, D Qian, G Krainer, E de Csilléry, TJ Welsh, T Sneideris, ...
Journal: bioRxiv

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Formation of amyloid loops in brain tissues is controlled by the flexibility of protofibril chains
Authors: A Miller, J Wei, S Meehan, CM Dobson, ME Welland, D Klenerman, ...
Journal: Proceedings of the National Academy of Sciences 120 (21)

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Label-free detection of proteins with optofluidic hollow-core photonic crystal fibre sensors
Authors: JR Heck, E Miele, R Mouthaan, MH Frosz, TPJ Knowles, TG Euser
Journal: SPIE Future Sensing Technologies 2023 12327

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Microfluidic antibody affinity profiling of alloantibody-HLA interactions in human serum
Authors: MM Schneider, T Scheidt, AJ Priddey, CK Xu, M Hu, G Meisl, ...
Journal: Biosensors and Bioelectronics 228

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Theoretical and Data-Driven Approaches for Biomolecular Condensates
Authors: KL Saar, D Qian, LL Good, AS Morgunov, R Collepardo-Guevara, ...
Journal: Chemical Reviews

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O010 A novel microfluidic immunoassay for in-solution quantification of alloantibody affinity and concentration in transplantation and beyond
Authors: A Priddey, G Karahan, M Schneider, G Meisl, T Scheidt, C Xu, S Peacock, ...
Journal: British Journal of Surgery 110 (Supplement_3)

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Fluidic device
Authors: S Cohen, T Knowles, C Dobson, L RAJAH, D White
Journal: 

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Surface patches induce nonspecific binding and phase separation of antibodies
Authors: H Ausserwöger, G Krainer, TJ Welsh, N Thorsteinson, E de Csilléry, ...
Journal: Proceedings of the National Academy of Sciences 120 (15)

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Protocol to determine antibody affinity and concentration in complex solutions using microfluidic antibody affinity profiling
Authors: M Emmenegger, R Worth, S Fiedler, SRA Devenish, TPJ Knowles, ...
Journal: STAR protocols 4 (1)

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Multidimensional Protein Solubility Optimization with an Ultrahigh-Throughput Microfluidic Platform
Authors: NA Erkamp, M Oeller, T Sneideris, H Ausserwoger, A Levin, TJ Welsh, ...
Journal: Analytical Chemistry 95 (12)

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Kinetic Analysis Reveals the Role of Secondary Nucleation in Regenerated Silk Fibroin Self-Assembly
Authors: A Kamada, Z Toprakcioglu, TPJ Knowles
Journal: Biomacromolecules 24 (4)

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Spontaneous nucleation and fast aggregate-dependent proliferation of α-synuclein aggregates within liquid condensates at neutral pH
Authors: ST Dada, MC Hardenberg, Z Toprakcioglu, LK Mrugalla, MP Cali, ...
Journal: Proceedings of the National Academy of Sciences 120 (9)

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Single-Molecule Sizing through Nanocavity Confinement
Authors: RPB Jacquat, G Krainer, QAE Peter, AN Babar, O Vanderpoorten, CK Xu, ...
Journal: Nano Letters 23 (5)

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Selenium Silk Nanostructured Films with Antifungal and Antibacterial Activity
Authors: Z Toprakcioglu, EG Wiita, AK Jayaram, RC Gregory, TPJ Knowles
Journal: ACS Applied Materials & Interfaces 15 (8)

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Continuous population-level monitoring of SARS-CoV-2 seroprevalence in a large European metropolitan region
Authors: M Emmenegger, E De Cecco, D Lamparter, RPB Jacquat, J Riou, ...
Journal: Iscience 26 (2)

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Characterizing protein interactions in biomolecular phase separation
Authors: H Ausserwöger, G Krainer, D Qian, T Welsh, T Sneideris, MM Schneider, ...
Journal: Biophysical Journal 122 (3)

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Designer proteins as potential therapeutic biomolecular condensates
Authors: TLC Ng, M Hoare, T Welsh, S Tomas, E Wilde, TPJ Knowles, LS Itzhaki, ...
Journal: Biophysical Journal 122 (3)

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Approximate analytical solution to the Flory-Huggins model
Authors: D Qian, TCT Michaels, TPJ Knowles
Journal: Biophysical Journal 122 (3)

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Spatially non-uniform condensates emerge from dynamically arrested phase separation
Authors: NA Erkamp, T Sneideris, H Ausserwöger, D Qian, S Qamar, J Nixon-Abell, ...
Journal: Nature Communications 14 (1)

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Direct digital sensing of protein biomarkers in solution
Authors: G Krainer, KL Saar, WE Arter, TJ Welsh, MA Czekalska, RPB Jacquat, ...
Journal: Nature Communications 14 (1)

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Bioprinting microporous functional living materials from protein-based core-shell microgels
Authors: Y Ou, S Cao, Y Zhang, H Zhu, C Guo, W Yan, F Xin, W Dong, Y Zhang, ...
Journal: Nature Communications 14 (1)

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Enhanced surface nanoanalytics of transient biomolecular processes
Authors: A Miller, S Chia, Z Toprakcioglu, T Hakala, R Schmid, Y Feng, T Kartanas, ...
Journal: Science Advances 9 (2)

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The chromatin regulator HMGA1a undergoes phase separation in the nucleus
Authors: H Zhu, M Narita, JA Joseph, G Krainer, WE Arter, I Olan, KL Saar, ...
Journal: ChemBioChem 24 (1)

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Microfluidic antibody profiling after repeated SARS-CoV-2 vaccination links antibody affinity and concentration to impaired immunity and variant escape in patients on anti-CD …
Authors: A Priddey, MXH Chen-Xu, DJ Cooper, S MacMillan, G Meisl, CK Xu, ...
Journal: bioRxiv

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Molecular mechanism of α-synuclein aggregation on lipid membranes revealed.
Authors: AJ Dear, X Teng, SR Ball, J Lewin, RI Horne, D Clow, N Harper, K Yahya, ...
Journal: bioRxiv

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Ganglioside Lipids Inhibit the Aggregation of the Alzheimer's Related Peptide Amyloid-β
Authors: Z Toprakcioglu, AK Jayaram, T Knowles
Journal: bioRxiv

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Glutamate helps unmask the differences in driving forces for phase separation versus clustering of FET family proteins in sub-saturated solutions
Authors: M Kar, LT Vogel, G Chauhan, H Ausserwoger, TJ Welsh, AR Kamath, ...
Journal: bioRxiv

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Self-replication of Abeta42 aggregates occurs on small and isolated fibril sites
Authors: S Curk, J Krausser, G Meisl, D Frenkel, S Linse, TCT Michaels, ...
Journal: bioRxiv

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Amyloids and protein aggregation
Authors: S Linse, T Knowles
Journal: Chemical Science

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α-Synuclein oligomers form by secondary nucleation
Authors: CK Xu, G Meisl, E Andrzejewska, G Krainer, AJ Dear, MC Cruz, S Turi, ...
Journal: bioRxiv

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Maturation-dependent changes in the structure and seeding capacity of Aβ42 amyloid fibrils
Authors: AM Miller, S Chia, E Klimont, T Knowles, M Vendruscolo, FS Ruggeri
Journal: bioRxiv

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ANXA11 biomolecular condensates facilitate protein-lipid phase coupling on lysosomal membranes
Authors: J Nixon-Abell, FS Ruggeri, S Qamar, TW Herling, MA Czekalska, Y Shen, ...
Journal: bioRxiv

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Alpha-synuclein oligomers displace monomeric alpha-synuclein from lipid membranes
Authors: G Sneideriene, MA Czekalska, CK Xu, A Jayaram, G Krainer, WE Arter, ...
Journal: bioRxiv

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Modulating Nucleic Acid Phase Transitions as a Mechanism of Action for Cell-Penetrating Antimicrobial Peptides
Authors: T Sneideris, NA Erkamp, H Ausserwoger, KL Saar, TJ Welsh, D Qian, ...
Journal: bioRxiv

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Non-specificity fingerprints for clinical stage antibodies in solution
Authors: TW Herling, GI Invernizzi, H Ausserwoeger, JR Bjelke, T Egebjerg, S Lund, ...
Journal: bioRxiv

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Adsorption of RNA to interfaces of biomolecular condensates enables wetting transitions
Authors: NA Erkamp, M Farag, D Qian, T Sneideris, TJ Welsh, H Ausserwoger, ...
Journal: bioRxiv

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Design of amyloidogenic peptide traps
Authors: DD Sahtoe, EA Andrzejewska, HL Han, E Rennella, MM Schneider, ...
Journal: bioRxiv

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Devices and applications at the micro-and nanoscale rsc. li/loc
Authors: NA Erkamp, R Qi, TJ Welsh, TPJ Knowles, G Imparato, F Urciuolo, ...
Journal: Lab Chip 23

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Microfluidics for multiscale studies of biomolecular condensates
Authors: NA Erkamp, R Qi, TJ Welsh, TPJ Knowles
Journal: Lab on a Chip 23 (1)

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2022

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Tie-line analysis reveals interactions driving heteromolecular condensate formation
Authors: D Qian, TJ Welsh, NA Erkamp, S Qamar, J Nixon-Abell, G Krainer, ...
Journal: Physical Review X 12 (4)

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A Kinetic Map of the Influence of Biomimetic Lipid Model Membranes on Aβ42 Aggregation
Authors: KN Baumann, G Šneiderienė, M Sanguanini, M Schneider, O Rimon, ...
Journal: ACS Chemical Neuroscience 14 (2)

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Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
Authors: WE Arter, R Qi, NA Erkamp, G Krainer, K Didi, TJ Welsh, J Acker, ...
Journal: Nature Communications 13 (1)

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Perphenazine–macrocycle conjugates rapidly sequester the Aβ42 monomer and prevent formation of toxic oligomers and amyloid
Authors: SR Ball, JSP Adamson, MA Sullivan, MR Zimmermann, V Lo, ...
Journal: ACS Chemical Neuroscience 14 (1)

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Selenium Silk Nanostructured Films for Antifungal and Antibacterial Treatments
Authors: Z Toprakcioglu, EG Wiita, AK Jayaram, RC Gregory, TPJ Knowles
Journal: bioRxiv

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Core–Shell Spheroid‐Laden Microgels Crosslinked under Biocompatible Conditions for Probing Cancer‐Stromal Communication
Authors: H Zhu, LWY Roode, AJ Parry, NA Erkamp, M Rodriguez-Garcia, M Narita, ...
Journal: Advanced NanoBiomed Research 2 (12)

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Non-specificity as the sticky problem in therapeutic antibody development
Authors: H Ausserwöger, MM Schneider, TW Herling, P Arosio, G Invernizzi, ...
Journal: Nature Reviews Chemistry 6 (12)

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Serological fingerprints link antiviral activity of therapeutic antibodies to affinity and concentration
Authors: S Fiedler, SRA Devenish, AS Morgunov, A Ilsley, F Ricci, M Emmenegger, ...
Journal: Scientific Reports 12 (1)

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Characterization of full-length p53 aggregates and their kinetics of formation
Authors: L Julian, JC Sang, Y Wu, G Meisl, JH Brelstaff, A Miller, MR Cheetham, ...
Journal: Biophysical Journal 121 (22)

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Structure-Based Discovery of Small-Molecule Inhibitors of the Autocatalytic Proliferation of α-Synuclein Aggregates
Authors: S Chia, Z Faidon Brotzakis, RI Horne, A Possenti, B Mannini, R Cataldi, ...
Journal: Molecular Pharmaceutics 20 (1)

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Microscale diffusiophoresis of proteins
Authors: QAE Peter, RPB Jacquat, TW Herling, PK Challa, T Kartanas, ...
Journal: The Journal of Physical Chemistry B 126 (44)

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A chip-based supersonic microfluidic nebulizer for efficient sample introduction into inductively coupled plasma–Mass spectrometry
Authors: E Mavrakis, Z Toprakcioglu, N Lydakis-Simantiris, TPJ Knowles, ...
Journal: Analytica Chimica Acta 1229

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Intracellular FUS protein accumulation leads to cytoskeletal, organelle and cellular homeostasis perturbations
Authors: CW Chung, AJ Zhou, I Mela, AD Stephens, A Miyashita, ...
Journal: bioRxiv

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Hydrodynamics of Droplet Sorting in Asymmetric Acute Junctions
Authors: H Yang, TPJ Knowles
Journal: Micromachines 13 (10)

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Small soluble α-synuclein aggregates are the toxic species in Parkinson's disease
Authors: D Emin, YP Zhang, E Lobanova, A Miller, X Li, Z Xia, H Dakin, DI Sideris, ...
Journal: Nature communications 13 (1)

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Label-free monitoring of proteins in optofluidic hollow-core photonic crystal fibres
Authors: JR Heck, E Miele, R Mouthaan, MH Frosz, TPJ Knowles, TG Euser
Journal: Methods and Applications in Fluorescence 10 (4)

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Influence of denaturants on amyloid β42 aggregation kinetics
Authors: T Weiffert, G Meisl, S Curk, R Cukalevski, A Šarić, TPJ Knowles, S Linse
Journal: Frontiers in Neuroscience 16

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Structure-specific amyloid precipitation in biofluids
Authors: M Rodrigues, P Bhattacharjee, A Brinkmalm, DT Do, CM Pearson, S De, ...
Journal: Nature Chemistry 14 (9)

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Both COVID-19 infection and vaccination induce high-affinity cross-clade responses to SARS-CoV-2 variants
Authors: M Emmenegger, S Fiedler, SD Brugger, SRA Devenish, AS Morgunov, ...
Journal: Iscience 25 (8)

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Analytical solution to the Flory–huggins model
Authors: D Qian, TCT Michaels, TPJ Knowles
Journal: The journal of physical chemistry letters 13 (33)

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Solid/liquid coexistence during aging of FUS condensates
Authors: Y Shen, A Chen, W Wang, Y Shen, FS Ruggeri, S Aime, Z Wang, S Qamar, ...
Journal: bioRxiv

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Uncovering the universality of self-replication in protein aggregation and its link to disease
Authors: G Meisl, CK Xu, JD Taylor, TCT Michaels, A Levin, D Otzen, D Klenerman, ...
Journal: Science Advances 8 (31)

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Adsorption free energy predicts amyloid protein nucleation rates
Authors: Z Toprakcioglu, A Kamada, TCT Michaels, M Xie, J Krausser, J Wei, ...
Journal: Proceedings of the National Academy of Sciences 119 (31)

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Recent advances in microgels: from biomolecules to functionality
Authors: Y Xu, H Zhu, A Denduluri, Y Ou, NA Erkamp, R Qi, Y Shen, TPJ Knowles
Journal: Small 18 (34)

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A conformational switch controlling the toxicity of the prion protein
Authors: K Frontzek, M Bardelli, A Senatore, A Henzi, RR Reimann, S Bedir, ...
Journal: Nature Structural & Molecular Biology 29 (8)

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DNA–liposome hybrid carriers for triggered cargo release
Authors: KN Baumann, T Schröder, PS Ciryam, D Morzy, P Tinnefeld, ...
Journal: ACS Applied Bio Materials 5 (8)

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Phase-separating RNA-binding proteins form heterogeneous distributions of clusters in subsaturated solutions
Authors: M Kar, F Dar, TJ Welsh, LT Vogel, R Kühnemuth, A Majumdar, G Krainer, ...
Journal: Proceedings of the National Academy of Sciences 119 (28)

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Thermodynamics of oligomeric alph-asynuclein-membrane interactions
Authors: G Musteikyte, C Xu, M Czekalska, Q Peter, G Krainer, S Devenish, ...
Journal: FEBS OPEN BIO 12

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Mechanistic models of protein aggregation across length-scales and time-scales: from the test tube to neurodegenerative disease
Authors: G Meisl, TPJ Knowles, D Klenerman
Journal: Frontiers in neuroscience 16

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Aging can transform single-component protein condensates into multiphase architectures
Authors: A Garaizar, JR Espinosa, JA Joseph, G Krainer, Y Shen, TPJ Knowles, ...
Journal: Proceedings of the National Academy of Sciences 119 (26)

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Kinetic profiling of therapeutic strategies for inhibiting the formation of amyloid oligomers
Authors: TCT Michaels, AJ Dear, SIA Cohen, M Vendruscolo, TPJ Knowles
Journal: The Journal of Chemical Physics 156 (16)

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Analytical solution to the Flory Huggins model reveals scaling behaviour and enables quantitative interpretation of experimental data
Authors: D Qian, TCT Michaels, TPJ Knowles
Journal: bioRxiv

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A Kinetic Map of the Influence of Biomimetic Lipid Membrane Models on Aβ42 Aggregation
Authors: KN Baumann, M Sanguanini, O Rimon, G Šneiderienė, H Greer, ...
Journal: bioRxiv

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Microfluidic antibody affinity profiling reveals the role of memory reactivation and cross-reactivity in the defense against SARS-CoV-2
Authors: V Denninger, CK Xu, G Meisl, AS Morgunov, S Fiedler, A Ilsley, ...
Journal: ACS Infectious Diseases 8 (4)

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Surface interaction patches link non-specific binding and phase separation of antibodies
Authors: H Ausserwöger, G Krainer, TJ Welsh, T Sneideris, MM Schneider, ...
Journal: bioRxiv

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The pathological G51D mutation in alpha-synuclein oligomers confers distinct structural attributes and cellular toxicity
Authors: CK Xu, M Castellana-Cruz, SW Chen, Z Du, G Meisl, A Levin, B Mannini, ...
Journal: Molecules 27 (4)

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Using microscopy techniques to structurally characterise TDP-43 inclusions present in mammalian cell models
Authors: NS Matharu, CW Chung, JR Kumita, GS Kaminski, TP Knowles
Journal: Biophysical Journal 121 (3)

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Mechanism of secondary nucleation from the direct observation of Aβ42 aggregation at the single fibril level
Authors: MR Zimmermann, SC Bera, G Meisl, S Dasadhikari, S Ghosh, S Linse, ...
Journal: Biophysical Journal 121 (3)

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Simultaneous fractionation and characterization of pre-fibrillar aggregates in solution with single-molecule microfluidics
Authors: EA Andrzejewska, G Krainer, CK Xu, R Jacquat, MM Schneider, W Arter, ...
Journal: Biophysical Journal 121 (3)

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Universal lab-on-a-chip microfluidic spray deposition for bulk and single-molecule analytical methods on surfaces
Authors: AM Miller, SKR Chia, T Hakala, Z Toprakcioglu, M Vendruscolo, ...
Journal: Biophysical Journal 121 (3)

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Hsc70 mediated disaggregation of α-synuclein fibrils
Authors: MM Schneider, S Gautam, TW Herling, G Krainer, E Andrzejewska, ...
Journal: Biophysical Journal 121 (3)

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Multiphase condensates from a kinetically arrested phase transition
Authors: NA Erkamp, T Sneideris, H Ausserwöger, D Qian, S Qamar, J Nixon-Abell, ...
Journal: bioRxiv

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The C-terminal tail of α-synuclein protects against aggregate replication but is critical for oligomerization
Authors: A Farzadfard, JN Pedersen, G Meisl, AK Somavarapu, P Alam, L Goksøyr, ...
Journal: Communications biology 5 (1)

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Nanofluidic Traps by Two-Photon Fabrication for Extended Detection of Single Macromolecules and Colloids in Solution
Authors: O Vanderpoorten, AN Babar, G Krainer, RPB Jacquat, PK Challa, Q Peter, ...
Journal: ACS Applied Nano Materials 5 (2)

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Micromechanics of soft materials using microfluidics
Authors: Y Xu, H Zhu, Y Shen, APM Guttenplan, KL Saar, Y Lu, D Vigolo, LS Itzhaki, ...
Journal: MRS Bulletin 47 (2)

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Microfluidic characterisation reveals broad range of SARS-CoV-2 antibody affinity in human plasma
Authors: MM Schneider, M Emmenegger, CK Xu, IC Morales, G Meisl, P Turelli, ...
Journal: Life science alliance 5 (2)

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Microchip Free-Flow Electrophoresis for Bioanalysis, Sensing, and Purification
Authors: WE Arter, KL Saar, TW Herling, TPJ Knowles
Journal: Biomedical Engineering Technologies: Volume 2

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Surface electrostatics govern the emulsion stability of biomolecular condensates
Authors: TJ Welsh, G Krainer, JR Espinosa, JA Joseph, A Sridhar, M Jahnel, ...
Journal: Nano letters 22 (2)

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Designer nanocarries through DNA self-assembly
Authors: S Hernández-Ainsa, KN Baumann, J Joseph, A Postigo, J Barrio, ...
Journal: 

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Hydrodynamics of Droplet Sorting in Asymmetric Acute Junctions. Micromachines 2022, 13, 1640
Authors: H Yang, TPJ Knowles
Journal: s Note: MDPI stays neutral with regard to jurisdictional claims in published …

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Both COVID-19 infection and vaccination induce high-affinity cross-clade responses to SARS-CoV-2 variants (preprint)
Authors: M Emmenegger, S Fiedler, S Brugger, S Devenish, A Morgunov, A Ilsley, ...
Journal: 

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Serological fingerprints link antiviral activity of therapeutic antibodies to affinity and concentration (preprint)
Authors: S Fiedler, SRA Devenish, AS Morgunov, A Ilsley, F Ricci, M Emmenegger, ...
Journal: 

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Antibody affinity and concentration of convalescent sera provide context for reduced SARS-CoV-2 Omicron spike affinity of therapeutic antibodies
Authors: S Fiedler, SRA Devenish, AS Morgunov, A Ilsley, F Ricci, M Emmenegger, ...
Journal: bioRxiv

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Squalamine and trodusquemine: Two natural products for neurodegenerative diseases, from physical chemistry to the clinic
Authors: R Limbocker, S Errico, D Barbut, TPJ Knowles, M Vendruscolo, F Chiti, ...
Journal: Natural Product Reports 39 (4)

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Biomembranes in bioelectronic sensing
Authors: AK Jayaram, AM Pappa, S Ghosh, ZA Manzer, WC Traberg, TPJ Knowles, ...
Journal: Trends in Biotechnology 40 (1)

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2021

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Rate‐limiting processes of tau aggregate accumulation in Alzheimer's disease
Authors: G Meisl, Y Zuo, K Allinson, T Rittman, SL DeVos, JS Sanchez, CK Xu, ...
Journal: Alzheimer's & Dementia 17

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2-photon-fabricated nano-fluidic traps for extended detection of single macromolecules and colloids in solution
Authors: O Vanderpoorten, AN Babar, G Krainer, RPB Jacquat, PK Challa, Q Peter, ...
Journal: bioRxiv

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Proliferation of tau 304–380 fragment aggregates through autocatalytic secondary nucleation
Authors: DC Rodriguez Camargo, E Sileikis, S Chia, E Axell, K Bernfur, RL Cataldi, ...
Journal: ACS Chemical Neuroscience 12 (23)

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Discovery of Potent Inhibitors of α-Synuclein Aggregation Using Structure-Based Iterative Learning
Authors: RI Horne, E Andrzejewska, P Alam, ZF Brotzakis, A Srivastava, A Aubert, ...
Journal: bioRxiv

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Comparative Studies in the A30P and A53T α-Synuclein C. elegans Strains to Investigate the Molecular Origins of Parkinson's Disease
Authors: K Nishioka, E Vayndorf, PJ Kahle, EAA Nollen, M Vendruscolo, FA Aprile, ...
Journal: Intracellular Mechanisms of α-Synuclein Processing

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Liquid–liquid phase separation underpins the formation of replication factories in rotaviruses
Authors: F Geiger, J Acker, G Papa, X Wang, WE Arter, KL Saar, NA Erkamp, R Qi, ...
Journal: The EMBO Journal 40 (21)

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Surface-catalyzed secondary nucleation dominates the generation of toxic IAPP aggregates
Authors: DC Rodriguez Camargo, S Chia, J Menzies, B Mannini, G Meisl, ...
Journal: Frontiers in Molecular Biosciences 8

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In vivo rate-determining steps of tau seed accumulation in Alzheimer's disease
Authors: G Meisl, E Hidari, K Allinson, T Rittman, SL DeVos, JS Sanchez, CK Xu, ...
Journal: Science advances 7 (44)

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Kinetic and thermodynamic driving factors in the assembly of phenylalanine-based modules
Authors: D Zaguri, MR Zimmermann, G Meisl, A Levin, S Rencus-Lazar, ...
Journal: ACS nano 15 (11)

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The Hsc70 disaggregation machinery removes monomer units directly from α-synuclein fibril ends
Authors: MM Schneider, S Gautam, TW Herling, E Andrzejewska, G Krainer, ...
Journal: Nature Communications 12 (1)

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Can single-component protein condensates form multiphase architectures?
Authors: A Garaizar, JR Espinosa, JA Joseph, G Krainer, Y Shen, TPJ Knowles, ...
Journal: bioRxiv

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Accelerating reaction rates of biomolecules by using shear stress in artificial capillary systems
Authors: TA Hakala, EV Yates, PK Challa, Z Toprakcioglu, K Nadendla, ...
Journal: Journal of the American Chemical Society 143 (40)

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New frontiers for machine learning in protein science
Authors: AS Morgunov, KL Saar, M Vendruscolo, TPJ Knowles
Journal: Journal of Molecular Biology 433 (20)

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Deformable and Robust Core–Shell Protein Microcapsules Templated by Liquid–Liquid Phase‐Separated Microdroplets
Authors: Y Xu, Y Shen, TCT Michaels, KN Baumann, D Vigolo, Q Peter, Y Lu, ...
Journal: Advanced Materials Interfaces 8 (19)

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Sequential storage and release of microdroplets
Authors: Z Toprakcioglu, TPJ Knowles
Journal: Microsystems & Nanoengineering 7 (1)

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Mechanism of secondary nucleation at the single fibril level from direct observations of Aβ42 aggregation
Authors: MR Zimmermann, SC Bera, G Meisl, S Dasadhikari, S Ghosh, S Linse, ...
Journal: Journal of the American Chemical Society 143 (40)

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The binding of the small heat-shock protein αB-crystallin to fibrils of α-synuclein is driven by entropic forces
Authors: T Scheidt, JA Carozza, CC Kolbe, FA Aprile, O Tkachenko, MMJ Bellaiche, ...
Journal: Proceedings of the National Academy of Sciences 118 (38)

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Sequential Storage and Release of Microdroplets for On and Off-chip Analysis
Authors: Z Toprakcioglu, T Knowles
Journal: 

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LAG3 is not expressed in human and murine neurons and does not modulate α‐synucleinopathies
Authors: M Emmenegger, E De Cecco, M Hruska‐Plochan, T Eninger, ...
Journal: EMBO Molecular Medicine 13 (9)

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Unraveling the physicochemical determinants of protein liquid-liquid phase separation by nanoscale infrared vibrational spectroscopy
Authors: FS Ruggeri, AM Miller, M Vendruscolo, TPJ Knowles
Journal: Bio-protocol 11 (16)

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Feedback control of protein aggregation
Authors: AJ Dear, TCT Michaels, TPJ Knowles, L Mahadevan
Journal: The Journal of Chemical Physics 155 (6)

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Conformational expansion of tau in condensates promotes irreversible aggregation
Authors: J Wen, L Hong, G Krainer, QQ Yao, TPJ Knowles, S Wu, S Perrett
Journal: Journal of the American Chemical Society 143 (33)

------------------------------
Detection and Quantification of Immunologically Relevant Alloantibody-HLA Interactions Using Microfluidic Antibody Affinity Profiling
Authors: A Priddey, M Schneider, G Karahan, T Scheidt, C Xu, G Meisl, H Copley, ...
Journal: TRANSPLANT INTERNATIONAL 34

------------------------------
Liquid–Liquid Phase‐Separated Systems from Reversible Gel–Sol Transition of Protein Microgels (Adv. Mater. 33/2021)
Authors: Y Xu, R Qi, H Zhu, B Li, Y Shen, G Krainer, D Klenerman, TPJ Knowles
Journal: Advanced Materials 33 (33)

------------------------------
Liquid–Liquid Phase‐Separated Systems from Reversible Gel–Sol Transition of Protein Microgels
Authors: Y Xu, R Qi, H Zhu, B Li, Y Shen, G Krainer, D Klenerman, TPJ Knowles
Journal: Advanced Materials 33 (33)

------------------------------
Mutations in two SARS-CoV-2 variants of concern reflect two distinct strategies of antibody escape
Authors: S Fiedler, V Denninger, AS Morgunov, A Ilsley, R Worth, G Meisl, CK Xu, ...
Journal: bioRxiv

------------------------------
Understanding the role of memory re-activation and cross-reactivity in the defense against SARS-CoV-2
Authors: V Denninger, CK Xu, G Meisl, AS Morgunov, S Fiedler, A Ilsley, ...
Journal: bioRxiv

------------------------------
Protein Conjugation by Electrophilic Alkynylation Using 5-(Alkynyl) dibenzothiophenium Triflates
Authors: V Laserna, A Istrate, K Kafuta, TA Hakala, TPJ Knowles, M Alcarazo, ...
Journal: Bioconjugate Chemistry 32 (8)

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pH‐Responsive Capsules with a Fibril Scaffold Shell Assembled from an Amyloidogenic Peptide
Authors: U Shimanovich, A Levin, D Eliaz, T Michaels, Z Toprakcioglu, B Frohm, ...
Journal: Small 17 (26)

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Controlled self-assembly of plant proteins into high-performance multifunctional nanostructured films
Authors: A Kamada, M Rodriguez-Garcia, FS Ruggeri, Y Shen, A Levin, ...
Journal: Nature Communications 12 (1)

------------------------------
In situ Sub‐Cellular Identification of Functional Amyloids in Bacteria and Archaea by Infrared Nanospectroscopy
Authors: DE Otzen, MS Dueholm, Z Najarzadeh, TPJ Knowles, FS Ruggeri
Journal: Small Methods 5 (6)

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Pulsed Hydrogen–Deuterium Exchange Reveals Altered Structures and Mechanisms in the Aggregation of Familial Alzheimer's Disease Mutants
Authors: E Illes-Toth, G Meisl, DL Rempel, TPJ Knowles, ML Gross
Journal: ACS chemical neuroscience 12 (11)

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Antibody affinity governs the inhibition of SARS-CoV-2 spike/ACE2 binding in patient serum
Authors: S Fiedler, MA Piziorska, V Denninger, AS Morgunov, A Ilsley, AY Malik, ...
Journal: ACS Infectious Diseases 7 (8)

------------------------------
Learning the molecular grammar of protein condensates from sequence determinants and embeddings
Authors: KL Saar, AS Morgunov, R Qi, WE Arter, G Krainer, AA Lee, TPJ Knowles
Journal: Proceedings of the National Academy of Sciences 118 (15)

------------------------------
Tau AD fragment aggregates proliferate through autocatalytic secondary nucleation
Authors: DR Camargo, E Sileikis, S Chia, E Axell, K Bernfur, R Cataldi, S Cohen, ...
Journal: 

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Scaling analysis reveals the mechanism and rates of prion replication in vivo
Authors: G Meisl, T Kurt, I Condado-Morales, C Bett, S Sorce, M Nuvolone, ...
Journal: Nature structural & molecular biology 28 (4)

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Interactions of α-synuclein oligomers with lipid membranes
Authors: G Musteikytė, AK Jayaram, CK Xu, M Vendruscolo, G Krainer, ...
Journal: Biochimica et Biophysica Acta (BBA)-Biomembranes 1863 (4)

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Supramolecular peptide nanofibrils with optimized sequences and molecular structures for efficient retroviral transduction
Authors: S Sieste, T Mack, E Lump, M Hayn, D Schütz, A Röcker, C Meier, ...
Journal: Advanced Functional Materials 31 (17)

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The role of clearance mechanisms in the kinetics of pathological protein aggregation involved in neurodegenerative diseases
Authors: TB Thompson, G Meisl, TPJ Knowles, A Goriely
Journal: The Journal of chemical physics 154 (12)

------------------------------
From protein building blocks to functional materials
Authors: Y Shen, A Levin, A Kamada, Z Toprakcioglu, M Rodriguez-Garcia, Y Xu, ...
Journal: ACS nano 15 (4)

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Shear-mediated sol-gel transition of regenerated silk allows the formation of Janus-like microgels
Authors: Z Toprakcioglu, TPJ Knowles
Journal: Scientific Reports 11 (1)

------------------------------
Comparative Studies in the A30P and A53T α-Synuclein C. elegans Strains to Investigate the Molecular Origins of Parkinson's Disease
Authors: M Perni, A Van der Goot, R Limbocker, TJ Van Ham, FA Aprile, CK Xu, ...
Journal: Frontiers in Cell and Developmental Biology 9

------------------------------
Kinetic analysis reveals that independent nucleation events determine the progression of polyglutamine aggregation in C. elegans
Authors: T Sinnige, G Meisl, TCT Michaels, M Vendruscolo, TPJ Knowles, ...
Journal: Proceedings of the National Academy of Sciences 118 (11)

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Rapid highly sensitive general protein quantification through on-chip chemiluminescence
Authors: HK Chiu, T Kartanas, KL Saar, CM Luxhøj, S Devenish, TPJ Knowles
Journal: Biomicrofluidics 15 (2)

------------------------------
Direct digital sensing of proteins in solution through single-molecule optofluidics
Authors: G Krainer, KL Saar, WE Arter, TPJ Knowles
Journal: Biophysical Journal 120 (3)

------------------------------
Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions
Authors: G Krainer, TJ Welsh, JA Joseph, P St George-Hyslop, AA Hyman, ...
Journal: Biophysical Journal 120 (3)

------------------------------
One-Step Generation of Multisomes from Lipid-Stabilized Double Emulsions
Authors: MA Czekalska, AMJ Jacobs, Z Toprakcioglu, L Kong, KN Baumann, ...
Journal: ACS Applied Materials & Interfaces 13 (5)

------------------------------
Infrared nanospectroscopy reveals the molecular interaction fingerprint of an aggregation inhibitor with single Aβ42 oligomers
Authors: FS Ruggeri, J Habchi, S Chia, RI Horne, M Vendruscolo, TPJ Knowles
Journal: Nature Communications 12 (1)

------------------------------
Label-free protein analysis using liquid chromatography with gravimetric detection
Authors: T Kartanas, A Levin, Z Toprakcioglu, T Scheidt, TA Hakala, J Charmet, ...
Journal: Analytical Chemistry 93 (5)

------------------------------
In situ kinetic measurements of α-synuclein aggregation reveal large population of short-lived oligomers
Authors: E Zurlo, P Kumar, G Meisl, AJ Dear, D Mondal, MMAE Claessens, ...
Journal: PLoS One 16 (1)

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A dopamine metabolite stabilizes neurotoxic amyloid-β oligomers
Authors: R Cataldi, S Chia, K Pisani, FS Ruggeri, CK Xu, T Šneideris, M Perni, ...
Journal: Communications biology 4 (1)

------------------------------
Understanding the role of memory re-activation and cross-reactivity in the defense against SARS-CoV-2 (preprint)
Authors: V Denninger, CK Xu, G Meisl, AS Morgunov, S Fiedler, A Ilsley, ...
Journal: 

------------------------------
Shear-Mediated Sol-Gel Transition of
Authors: T Knowles
Journal: 

------------------------------
Microfluidic diffusional sizing for studying protein-protein interactions
Authors: MM Schneider, CM Dobson, A Aguzzi, FU Hartl, TPJ Knowles
Journal: Springer

------------------------------
The unhappy chaperone
Authors: S Linse, K Thalberg, TPJ Knowles
Journal: QRB Discovery 2

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Soluble amyloid beta-containing aggregates are present throughout the brain at early stages of Alzheimer's disease
Authors: DI Sideris, JSH Danial, D Emin, FS Ruggeri, Z Xia, YP Zhang, ...
Journal: Brain communications 3 (3)

------------------------------
Squalamine and its derivatives modulate the aggregation of amyloid-β and α-synuclein and suppress the toxicity of their oligomers
Authors: R Limbocker, R Staats, S Chia, FS Ruggeri, B Mannini, CK Xu, M Perni, ...
Journal: Frontiers in neuroscience

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Elongation rate and average length of amyloid fibrils in solution using isotope-labelled small-angle neutron scattering
Authors: BJ Eves, JJ Doutch, AE Terry, H Yin, M Moulin, M Haertlein, VT Forsyth, ...
Journal: RSC chemical biology 2 (4)

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Machine learning-aided protein identification from multidimensional signatures
Authors: Y Zhang, MA Wright, KL Saar, P Challa, AS Morgunov, QAE Peter, ...
Journal: Lab on a Chip 21 (15)

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Publisher Correction: A dopamine metabolite stabilizes neurotoxic amyloid-β oligomers
Authors: R Cataldi, S Chia, K Pisani, FS Ruggeri, CK Xu, T Šneideris, M Perni, ...
Journal: Communications Biology 4

------------------------------
Correction: Correction: Multi-scale microporous silica microcapsules from gas-in water-in oil emulsions
Authors: Z Toprakcioglu, TA Hakala, A Levin, CFW Becker, GJL Bernardes, ...
Journal: Soft Matter 17 (1)

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Evolution of conformation, nanomechanics, and infrared nanospectroscopy of single amyloid fibrils converting into microcrystals
Authors: J Adamcik, FS Ruggeri, JT Berryman, A Zhang, TPJ Knowles, ...
Journal: Advanced Science 8 (2)

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2020

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Physical mechanisms of amyloid nucleation on fluid membranes
Authors: J Krausser, TPJ Knowles, A Šarić
Journal: Proceedings of the National Academy of Sciences 117 (52)

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Environmental control of amyloid polymorphism by modulation of hydrodynamic stress
Authors: J Zhou, L Venturelli, L Keiser, SK Sekatskii, F Gallaire, S Kasas, G Longo, ...
Journal: ACS nano 15 (1)

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In vitro measurements of protein–protein interactions show that antibody affinity governs the inhibition of SARS-CoV-2 spike/ACE2 binding in convalescent serum
Authors: S Fiedler, MA Piziorska, V Denninger, AS Morgunov, A Ilsley, AY Malik, ...
Journal: BioRxiv

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Rotavirus replication factories are complex ribonucleoprotein condensates
Authors: F Geiger, G Papa, WE Arter, J Acker, KL Saar, N Erkamp, R Qi, J Bravo, ...
Journal: bioRxiv

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Screening of small molecules using the inhibition of oligomer formation in α-synuclein aggregation as a selection parameter
Authors: R Staats, TCT Michaels, P Flagmeier, S Chia, RI Horne, J Habchi, S Linse, ...
Journal: Communications Chemistry 3 (1)

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Construction of a liquid-liquid phase separation system from the gel-sol transition of elongated protein microgels in a crowding agent
Authors: Y Xu, R Qi, H Zhu, B Li, Y Shen, G Krainer, D Klenerman, TPJ Knowles
Journal: bioRxiv

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Kinetic fingerprints differentiate the mechanisms of action of anti-Aβ antibodies
Authors: S Linse, T Scheidt, K Bernfur, M Vendruscolo, CM Dobson, SIA Cohen, ...
Journal: Nature structural & molecular biology 27 (12)

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Perphenazine-macrocycle conjugates rapidly sequester the Aβ42 monomer and inhibit amyloid formation
Authors: SR Ball, JSP Adamson, MA Sullivan, MR Zimmermann, V Lo, ...
Journal: 

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Amplification, not spreading limits rate of tau aggregate accumulation in Alzheimer's disease
Authors: G Meisl, Y Zuo, K Allinson, T Rittman, S DeVos, JS Sanchez, CK Xu, ...
Journal: bioRxiv

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Machine learning aided top-down proteomics on a microfluidic platform
Authors: Y Zhang, MA Wright, KL Saar, P Challa, AS Morgunov, QAE Peter, ...
Journal: BioRxiv

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Hamiltonian Dynamics of Saturated Elongation in Amyloid Fiber Formation
Authors: L Hong, X Liu, TCT Michaels, TPJ Knowles
Journal: arXiv preprint arXiv:2011.06222

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On the mechanism of self-assembly by a hydrogel-forming peptide
Authors: GA Braun, BE Ary, AJ Dear, MCH Rohn, AM Payson, DSM Lee, RC Parry, ...
Journal: Biomacromolecules 21 (12)

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Amyloid precipitation in biofluids using a structure-specific chemical antibody
Authors: M Rodrigues, P Bhattacharjee, A Brinkmalm, D Do, C Pearson, S De, ...
Journal: 

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Small-molecule sequestration of amyloid-β as a drug discovery strategy for Alzheimer's disease
Authors: GT Heller, FA Aprile, TCT Michaels, R Limbocker, M Perni, FS Ruggeri, ...
Journal: Science Advances 6 (45)

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Biomimetic peptide self-assembly for functional materials
Authors: A Levin, TA Hakala, L Schnaider, GJL Bernardes, E Gazit, TPJ Knowles
Journal: Nature Reviews Chemistry 4 (11)

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Machine learning models for predicting protein condensate formation from sequence determinants and embeddings
Authors: KL Saar, AS Morgunov, R Qi, WE Arter, G Krainer, AA Lee, TPJ Knowles
Journal: bioRxiv

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Rapid structural, kinetic, and immunochemical analysis of alpha-synuclein oligomers in solution
Authors: WE Arter, CK Xu, M Castellana-Cruz, TW Herling, G Krainer, KL Saar, ...
Journal: Nano letters 20 (11)

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The role of fibril structure and surface hydrophobicity in secondary nucleation of amyloid fibrils
Authors: D Thacker, K Sanagavarapu, B Frohm, G Meisl, TPJ Knowles, S Linse
Journal: Proceedings of the National Academy of Sciences 117 (41)

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Data supporting" Microscale diffusiophoresis of proteins"
Authors: Q Peter, R Jacquat, T Herling, P Challa, T Kartanas, T Knowles
Journal: 

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Autoantibodies against the prion protein in individuals with PRNP mutations
Authors: K Frontzek, M Carta, M Losa, M Epskamp, G Meisl, A Anane, JP Brandel, ...
Journal: Neurology 95 (14)

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Direct measurement of lipid membrane disruption connects kinetics and toxicity of Aβ42 aggregation
Authors: P Flagmeier, S De, TCT Michaels, X Yang, AJ Dear, C Emanuelsson, ...
Journal: Nature Structural & Molecular Biology 27 (10)

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Biomolecular condensates undergo a generic shear-mediated liquid-to-solid transition
Authors: Y Shen, FS Ruggeri, D Vigolo, A Kamada, S Qamar, A Levin, C Iserman, ...
Journal: Nature nanotechnology 15 (10)

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Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors
Authors: TCT Michaels, A Šarić, G Meisl, GT Heller, S Curk, P Arosio, S Linse, ...
Journal: Proceedings of the National Academy of Sciences 117 (39)

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Microfluidic Affinity Profiling reveals a Broad Range of Target Affinities for Anti-SARS-CoV-2 Antibodies in Plasma of COVID-19 Survivors
Authors: MM Schneider, M Emmenegger, CK Xu, IC Morales, G Meisl, P Turelli, ...
Journal: MedRxiv

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Converting lateral scanning into axial focusing to speed up three-dimensional microscopy
Authors: T Chakraborty, B Chen, S Daetwyler, BJ Chang, O Vanderpoorten, ...
Journal: Light: Science & Applications 9 (1)

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A rationally designed bicyclic peptide remodels Aβ42 aggregation in vitro and reduces its toxicity in a worm model of Alzheimer's disease
Authors: T Ikenoue, FA Aprile, P Sormanni, FS Ruggeri, M Perni, GT Heller, ...
Journal: Scientific reports 10 (1)

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Plant based functional materials
Authors: MR GARCIA, T Knowles, A Levin, A Kamada
Journal: 

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Research data supporting Digital Sensing and Molecular Computation by an Enzyme-Free DNA Circuit
Authors: W Arter, Y Yusim, Q Peter, C Taylor, D Klenerman, U Keyser, T Knowles
Journal: 

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Mechanism, scaling and rates of protein aggregation from in vivo measurements
Authors: G Meisl, AJ Dear, TCT Michaels, TPJ Knowles
Journal: arXiv preprint arXiv:2008.09699

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Research data supporting" Rapid two-dimensional characterisation of proteins in solution"
Authors: Q Peter, K Saar, T Müller, P Challa, T Herling, T Knowles
Journal: 

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Research data supporting" Multidimensional protein characterisation using microfluidic post-column analysis"
Authors: Q Peter, T Scheidt, T Kartanas, M Schneider, K Saar, T Müller, P Challa, ...
Journal: 

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Spatially-segmented single-cell transcriptomics by diffusional accessibility to a small-molecule dye
Authors: DB Morse, M Ceribelli, J De Jonghe, A Michalowski, C Muus, M Vias, ...
Journal: Cancer Research 80 (16_Supplement)

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Research data supporting" Microfluidic deposition for resolving single-molecule protein architecture and heterogeneity"
Authors: Q Peter, F Ruggeri, J Charmet, T Kartanas, SKR Chia, J Habchi, ...
Journal: 

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Research data supporting" Scalable integration of nano-, and microfluidics with hybrid two-photon lithography"
Authors: Q Peter, O Vanderpoorten, P Challa, U Keyser, J Baumberg, C Kaminski, ...
Journal: 

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Trodusquemine displaces protein misfolded oligomers from cell membranes and abrogates their cytotoxicity through a generic mechanism
Authors: R Limbocker, B Mannini, FS Ruggeri, R Cascella, CK Xu, M Perni, S Chia, ...
Journal: Communications biology 3 (1)

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Kinetic analysis reveals the rates and mechanisms of protein aggregation in a multicellular organism
Authors: T Sinnige, G Meisl, TCT Michaels, M Vendruscolo, TPJ Knowles, ...
Journal: bioRxiv

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Microfluidic Templating: Microfluidic Templating of Spatially Inhomogeneous Protein Microgels (Small 32/2020)
Authors: Y Xu, RPB Jacquat, Y Shen, D Vigolo, D Morse, S Zhang, TPJ Knowles
Journal: Small 16 (32)

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Microfluidic templating of spatially inhomogeneous protein microgels
Authors: Y Xu, RPB Jacquat, Y Shen, D Vigolo, D Morse, S Zhang, TPJ Knowles
Journal: Small 16 (32)

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Phase transition and crystallization kinetics of a supramolecular system in a microfluidic platform
Authors: D Cohen-Gerassi, ZA Arnon, T Guterman, A Levin, M Ghosh, M Aviv, ...
Journal: Chemistry of Materials 32 (19)

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Real-time highly-sensitive protein quantification through on-chip chemiluminescence
Authors: HK Chiu, T Kartanas, SRA Devenish, K Saar, CM Luxhøj, T Knowles
Journal: 

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Continuous flow reactors from microfluidic compartmentalization of enzymes within inorganic microparticles
Authors: TA Hakala, F Bialas, Z Toprakcioglu, B Bräuer, KN Baumann, A Levin, ...
Journal: ACS applied materials & interfaces 12 (29)

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Rational design of a conformation-specific antibody for the quantification of Aβ oligomers
Authors: FA Aprile, P Sormanni, M Podpolny, S Chhangur, LM Needham, ...
Journal: Proceedings of the National Academy of Sciences 117 (24)

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Single molecule secondary structure determination of proteins through infrared absorption nanospectroscopy
Authors: FS Ruggeri, B Mannini, R Schmid, M Vendruscolo, TPJ Knowles
Journal: Nature Communications 11 (1)

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High resolution and multidimensional protein condensate phase diagrams with a combinatorial microdroplet platform
Authors: WE Arter, R Qi, NA Erkamp, G Krainer, K Didi, TJ Welsh, J Acker, ...
Journal: bioRxiv

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Early peak and rapid decline of SARS-CoV-2 seroprevalence in a Swiss metropolitan region
Authors: M Emmenegger, E De Cecco, D Lamparter, RPB Jacquat, D Ebner, ...
Journal: 

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Kinetic diversity of amyloid oligomers
Authors: AJ Dear, TCT Michaels, G Meisl, D Klenerman, S Wu, S Perrett, S Linse, ...
Journal: Proceedings of the National Academy of Sciences 117 (22)

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Assessing motor-related phenotypes of Caenorhabditis elegans with the wide field-of-view nematode tracking platform
Authors: M Koopman, Q Peter, RI Seinstra, M Perni, M Vendruscolo, CM Dobson, ...
Journal: Nature protocols 15 (6)

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Ultrastructural evidence for self-replication of Alzheimer-associated Aβ42 amyloid along the sides of fibrils
Authors: M Törnquist, R Cukalevski, U Weininger, G Meisl, TPJ Knowles, T Leiding, ...
Journal: Proceedings of the National Academy of Sciences 117 (21)

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A Microfluidic Co‐Flow Route for Human Serum Albumin‐Drug–Nanoparticle Assembly
Authors: TA Hakala, S Davies, Z Toprakcioglu, B Bernardim, GJL Bernardes, ...
Journal: Chemistry–A European Journal 26 (27)

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Ultrathin polydopamine films with phospholipid nanodiscs containing a glycophorin a domain
Authors: T Marchesi D'Alvise, S Harvey, L Hueske, J Szelwicka, L Veith, ...
Journal: Advanced Functional Materials 30 (21)

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Dynamics of oligomer populations formed during the aggregation of Alzheimer's Aβ42 peptide
Authors: TCT Michaels, A Šarić, S Curk, K Bernfur, P Arosio, G Meisl, AJ Dear, ...
Journal: Nature chemistry 12 (5)

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Single particle zeta-potential measurements reveal the role of electrostatics in protein condensate stability
Authors: TJ Welsh, G Krainer, JR Espinosa, JA Joseph, A Sridhar, M Jahnel, ...
Journal: BioRxiv

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Digital sensing and molecular computation by an enzyme-free DNA circuit
Authors: WE Arter, Y Yusim, Q Peter, CG Taylor, D Klenerman, UF Keyser, ...
Journal: ACS nano 14 (5)

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Mechanism of droplet-formation in a supersonic microfluidic spray device
Authors: T Kartanas, Z Toprakcioglu, TA Hakala, A Levin, TW Herling, R Daly, ...
Journal: Applied Physics Letters 116 (15)

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Microfluidic approaches for the analysis of protein–protein interactions in solution
Authors: WE Arter, A Levin, G Krainer, TPJ Knowles
Journal: Biophysical reviews 12

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The molecular processes underpinning prion-like spreading and seed amplification in protein aggregation
Authors: G Meisl, TPJ Knowles, D Klenerman
Journal: Current opinion in neurobiology 61

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Complexity in Lipid Membrane Composition Induces Resilience to Aβ42 Aggregation
Authors: M Sanguanini, KN Baumann, S Preet, S Chia, J Habchi, TPJ Knowles, ...
Journal: Acs Chemical Neuroscience 11 (9)

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Rapid fractionation and characterisation of alpha-synuclein oligomers in solution
Authors: WE Arter, CK Xu, M Castellana-Cruz, TW Herling, G Krainer, KL Saar, ...
Journal: bioRxiv

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The influence of pathogenic mutations in α-synuclein on biophysical and structural characteristics of amyloid fibrils
Authors: FS Ruggeri, P Flagmeier, JR Kumita, G Meisl, DY Chirgadze, ...
Journal: ACS nano 14 (5)

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Modulating the Mechanical Performance of Macroscale Fibers through Shear‐Induced Alignment and Assembly of Protein Nanofibrils
Authors: A Kamada, A Levin, Z Toprakcioglu, Y Shen, V Lutz‐Bueno, KN Baumann, ...
Journal: Small 16 (9)

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Controllable coacervation of recombinantly produced spider silk protein using kosmotropic salts
Authors: P Mohammadi, C Jonkergouw, G Beaune, P Engelhardt, A Kamada, ...
Journal: Journal of colloid and interface science 560

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Lipid-stabilized double emulsions generated in planar microfluidic devices
Authors: L Kong, A Levin, Z Toprakcioglu, Y Xu, H Gang, R Ye, BZ Mu, ...
Journal: Langmuir 36 (9)

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Biocompatible Hybrid Organic/Inorganic Microhydrogels Promote Bacterial Adherence and Eradication in Vitro and in Vivo
Authors: L Schnaider, Z Toprakcioglu, A Ezra, X Liu, D Bychenko, A Levin, E Gazit, ...
Journal: Nano Letters 20 (3)

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Microfluidic Diffusional Sizing for Studying Protein-Protein Interactions
Authors: MM Schneider, T Scheidt, CM Dobson, TPJ Knowles
Journal: Biophysical Journal 118 (3)

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Investigation of Natural and Synthetic Aggregation Inhibitors using Microfluidic Applications
Authors: T Scheidt, J Carozza, JL Benesch, P Arosio, S Linse, TPJ Knowles
Journal: Biophysical Journal 118 (3)

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Molecular Forces in the Liquid-Liquid Phase Separation of Biomolecules
Authors: TJ Welsh, G Krainer, TP Knowles
Journal: Biophysical Journal 118 (3)

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Quantifying the thermodynamic stability of amyloid fibrils
Authors: KL Callaghan, Q Peter, JR Kumita, TP Knowles, CM Dobson
Journal: Biophysical Journal 118 (3)

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Attoliter protein nanogels from droplet nanofluidics for intracellular delivery
Authors: Z Toprakcioglu, PK Challa, DB Morse, T Knowles
Journal: Science Advances 6 (6)

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Transthyretin inhibits primary and secondary nucleations of amyloid-β peptide aggregation and reduces the toxicity of its oligomers
Authors: SA Ghadami, S Chia, FS Ruggeri, G Meisl, F Bemporad, J Habchi, ...
Journal: Biomacromolecules 21 (3)

------------------------------
Chris Dobson (1949–2019)
Authors: TPJ Knowles, M Vendruscolo
Journal: Nature Chemical Biology 16 (2)

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The amyloid phenomenon and its significance in biology and medicine
Authors: CM Dobson, TPJ Knowles, M Vendruscolo
Journal: Cold Spring Harbor perspectives in biology 12 (2)

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Raw data for Figures in the publication" Assessing motor-related phenotypes of Caenorhabditis elegans with the wide field-of-view nematode tracking platform"
Authors: Q Peter, M Koopman, RI Seinstra, M Perni, M Vendruscolo, CM Dobson, ...
Journal: 

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The catalytic nature of protein aggregation
Authors: AJ Dear, G Meisl, TCT Michaels, MR Zimmermann, S Linse, TPJ Knowles
Journal: The Journal of Chemical Physics 152 (4)

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Coating and stabilization of liposomes by clathrin-inspired DNA self-assembly
Authors: KN Baumann, L Piantanida, J García-Nafría, D Sobota, K Voïtchovsky, ...
Journal: Acs Nano 14 (2)

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Population-wide evolution of SARS-CoV-2 immunity tracked by a ternary immunoassay (preprint)
Authors: M Emmenegger, E De Cecco, D Lamparter, RPB Jacquat, D Ebner, ...
Journal: 

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From infection to immunity: understanding the response to SARS-CoV2 through in-silico modeling (preprint)
Authors: F Castiglione, D Deb, AP Srivastava, P Liò, A Liso, R Kumar, ...
Journal: 

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Evidence of a dysregulated Vitamin D pathway in SARS-CoV-2 infected patient's lung cells (preprint)
Authors: B George, R Amjesh, AM Paul, SK TR, MR Pillai, R Kumar, MM Schneider, ...
Journal: 

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Amelioration of aggregate cytotoxicity by catalytic conversion of protein oligomers into amyloid fibrils
Authors: J Yang, AJ Dear, QQ Yao, Z Liu, CM Dobson, TPJ Knowles, S Wu, ...
Journal: Nanoscale 12 (36)

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A microfluidic strategy for the detection of membrane protein interactions
Authors: Y Zhang, TW Herling, S Kreida, QAE Peter, T Kartanas, ...
Journal: Lab on a Chip 20 (17)

------------------------------
Half a century of amyloids: past, present and future
Authors: PC Ke, R Zhou, LC Serpell, R Riek, TPJ Knowles, HA Lashuel, E Gazit, ...
Journal: Chemical Society Reviews 49 (15)

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Multidimensional protein characterisation using microfluidic post-column analysis
Authors: T Scheidt, T Kartanas, Q Peter, MM Schneider, KL Saar, T Müller, ...
Journal: Lab on a Chip 20 (15)

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Early plateau of SARS-CoV-2 seroprevalence identified by tripartite immunoassay in a large population
Authors: M Emmenegger, E De Cecco, D Lamparter, RPB Jacquat, D Ebner, ...
Journal: Medrxiv

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Rapid generation of protein condensate phase diagrams using combinatorial droplet microfluidics
Authors: WE Arter, R Qi, G Krainer, TJ Welsh, Y Xu, PS George-Hyslop, S Alberti, ...
Journal: BioRxiv 10 (2020.06)

------------------------------
Identification of on-and off-pathway oligomers in amyloid fibril formation
Authors: AJ Dear, G Meisl, A Šarić, TCT Michaels, M Kjaergaard, S Linse, ...
Journal: Chemical science 11 (24)

------------------------------
Rapid characterisation of protein phase behaviour using droplet microfluidics
Authors: WE Arter
Journal: bioRxiv 10 (2020.06)

------------------------------
Population-wide evolution of SARS-CoV-2 immunity tracked by a ternary immunoassay
Authors: M Emmenegger, E De Cecco, D Lamparter, RPB Jacquat, J Riou, ...
Journal: 

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Templating S100A9 amyloids on Aβ fibrillar surfaces revealed by charge detection mass spectrometry, microscopy, kinetic and microfluidic analyses
Authors: J Pansieri, IA Iashchishyn, H Fakhouri, L Ostojić, M Malisauskas, ...
Journal: Chemical science 11 (27)

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Correction: Multi-scale microporous silica microcapsules from gas-in water-in oil emulsions
Authors: Z Toprakcioglu, TA Hakala, A Levin, CFW Becker, GJL Bernandes, ...
Journal: Soft Matter 16 (14)

------------------------------
Effects of sedimentation, microgravity, hydrodynamic mixing and air–water interface on α-synuclein amyloid formation
Authors: J Zhou, FS Ruggeri, MR Zimmermann, G Meisl, G Longo, SK Sekatskii, ...
Journal: Chemical Science 11 (14)

------------------------------
Multi-scale microporous silica microcapsules from gas-in water-in oil emulsions
Authors: Z Toprakcioglu, TA Hakala, A Levin, CFW Becker, GGL Bernandes, ...
Journal: Soft Matter 16 (12)

------------------------------
Kinetic fingerprints differentiate anti-Aβ therapies
Authors: S Linse, T Scheidt, K Bernfur, M Vendruscolo, CM Dobson, SIA Cohen, ...
Journal: bioRxiv

------------------------------
2019

------------------------------
Demo data for the publication" Assessing motor-related phenotypes of Caenorhabditis elegans with the wide field-of-view nematode tracking platform"
Authors: M Koopman, Q Peter, RI Seinstra, M Perni, M Vendruscolo, CM Dobson, ...
Journal: 

------------------------------
Assessing motor-related phenotypes of Caenorhabditis elegans with the wide field-of-view nematode tracking platform-Demo Data
Authors: M Koopman, Q Peter, R Seinstra, M Perni, M Vendruscolo, C Dobson, ...
Journal: 

------------------------------
Homage to Chris Dobson
Authors: J Baum, F Chiti, A De Simone, TPJ Knowles, JR Kumita, SE Radford, ...
Journal: Frontiers in molecular biosciences 6

------------------------------
Inside Back Cover: Nucleation and Growth of Amino Acid and Peptide Supramolecular Polymers through Liquid–Liquid Phase Separation (Angew. Chem. Int. Ed. 50/2019)
Authors: C Yuan, A Levin, W Chen, R Xing, Q Zou, TW Herling, PK Challa, ...
Journal: Angewandte Chemie International Edition 58 (50)

------------------------------
Innenrücktitelbild: Nucleation and Growth of Amino Acid and Peptide Supramolecular Polymers through Liquid–Liquid Phase Separation (Angew. Chem. 50/2019)
Authors: C Yuan, A Levin, W Chen, R Xing, Q Zou, TW Herling, PK Challa, ...
Journal: Angewandte Chemie 131 (50)

------------------------------
Nucleation and growth of amino acid and peptide supramolecular polymers through liquid–liquid phase separation
Authors: C Yuan, A Levin, W Chen, R Xing, Q Zou, TW Herling, PK Challa, ...
Journal: Angewandte Chemie International Edition 58 (50)

------------------------------
Soluble aggregates present in cerebrospinal fluid change in size and mechanism of toxicity during Alzheimer's disease progression
Authors: S De, DR Whiten, FS Ruggeri, C Hughes, M Rodrigues, DI Sideris, ...
Journal: Acta neuropathologica communications 7 (1)

------------------------------
Label-free analysis of protein aggregation and phase behavior
Authors: Z Toprakcioglu, P Challa, C Xu, TPJ Knowles
Journal: ACS nano 13 (12)

------------------------------
Top-down proteomics on a microfluidic platform
Authors: Y Zhang, MA Wright, PK Challa, KL Saar, S Devenish, Q Peter, ...
Journal: arXiv preprint arXiv:1910.11861

------------------------------
Kinetic fingerprint of antibody therapies predicts outcomes of Alzheimer clinical trials
Authors: S Linse, T Scheidt, K Bernfur, M Vendruscolo, CM Dobson, SIA Cohen, ...
Journal: bioRxiv

------------------------------
Autocatalytic amplification of Alzheimer-associated Aβ42 peptide aggregation in human cerebrospinal fluid
Authors: R Frankel, M Törnquist, G Meisl, O Hansson, U Andreasson, H Zetterberg, ...
Journal: Communications biology 2 (1)

------------------------------
A new platform for drug discovery
Authors: TPJ Knowles
Journal: Future Drug Discovery 1 (2)

------------------------------
RNA granules hitchhike on lysosomes for long-distance transport, using annexin A11 as a molecular tether
Authors: YC Liao, MS Fernandopulle, G Wang, H Choi, L Hao, CM Drerup, R Patel, ...
Journal: Cell 179 (1)

------------------------------
Characterizing individual protein aggregates by infrared nanospectroscopy and atomic force microscopy
Authors: FS Ruggeri, T Šneideris, S Chia, M Vendruscolo, TPJ Knowles
Journal: JoVE (Journal of Visualized Experiments)

------------------------------
Scalable integration of nano-, and microfluidics with hybrid two-photon lithography
Authors: O Vanderpoorten, Q Peter, PK Challa, UF Keyser, J Baumberg, ...
Journal: Microsystems & Nanoengineering 5 (1)

------------------------------
Nanostructured protein capsules
Authors: T Knowles
Journal: ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258

------------------------------
Programmable On‐Chip Artificial Cell Producing Post‐Translationally Modified Ubiquitinated Protein
Authors: S Zilberzwige‐Tal, A Levin, Z Toprakcioglu, TPJ Knowles, E Gazit, J Elbaz
Journal: Small 15 (31)

------------------------------
Enhancement of the anti-aggregation activity of a molecular chaperone using a rationally designed post-translational modification
Authors: PR Lindstedt, FA Aprile, MJ Matos, M Perni, JB Bertoldo, B Bernardim, ...
Journal: ACS Central Science 5 (8)

------------------------------
Clathrin-inspired coating and stabilization of liposomes by DNA self-assembly
Authors: KN Baumann, L Piantanida, J García-Nafría, D Sobota, K Voïtchovsky, ...
Journal: 

------------------------------
General sol to gel transition of liquid-liqud phase separated protein under shear
Authors: Y Shen, S Qamar, D Vigolo, A Kamada, S Zhang, P St George-Hyslop, ...
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 48

------------------------------
Rapid two-dimensional characterisation of proteins in solution
Authors: KL Saar, Q Peter, T Müller, PK Challa, TW Herling, TPJ Knowles
Journal: Microsystems & Nanoengineering 5 (1)

------------------------------
Universality of filamentous aggregation phenomena
Authors: TCT Michaels, AJ Dear, TPJ Knowles
Journal: Physical Review E 99 (6)

------------------------------
Fluidic apparatus and method
Authors: TPJ KNOWLES, KL SAAR, T KARTANAS, T Mueller
Journal: 

------------------------------
Sequence‐Optimized Peptide Nanofibers as Growth Stimulators for Regeneration of Peripheral Neurons
Authors: C Schilling, T Mack, S Lickfett, S Sieste, FS Ruggeri, T Sneideris, A Dutta, ...
Journal: Advanced Functional Materials 29 (24)

------------------------------
The presence of autoantibodies against the prion protein is independent of PRNP mutations
Authors: K Frontzek, M Carta, M Losa, M Epskamp, G Meisl, U Camenisch, ...
Journal: PRION 13

------------------------------
Quaternization of Vinyl/Alkynyl Pyridine Enables Ultrafast Cysteine‐Selective Protein Modification and Charge Modulation
Authors: MJ Matos, CD Navo, T Hakala, X Ferhati, A Guerreiro, D Hartmann, ...
Journal: Angewandte Chemie International Edition 58 (20)

------------------------------
Secondary nucleation and elongation occur at different sites on Alzheimer's amyloid-β aggregates
Authors: T Scheidt, U Łapińska, JR Kumita, DR Whiten, D Klenerman, MR Wilson, ...
Journal: Science Advances 5 (4)

------------------------------
3D microfluidics spray nozzle for sample processing and materials deposition
Authors: T Kartanas, R Rodrigues, T Müller, T Herling, T Knowles, J Charmet
Journal: AIP Conference Proceedings 2092 (1)

------------------------------
ADSoluble aggregates present in cerebrospinal fluid change in size and mechanism of toxicity during Alzheimer's disease progression
Authors: S De, DR Whiten, FS Ruggeri, C Hughes, M Rodrigues, DI Sideris, ...
Journal: bioRxiv

------------------------------
Different soluble aggregates of Aβ42 can give rise to cellular toxicity through different mechanisms
Authors: S De, DC Wirthensohn, P Flagmeier, C Hughes, FA Aprile, FS Ruggeri, ...
Journal: Nature communications 10 (1)

------------------------------
Fabrication and characterization of reconstituted silk microgels for the storage and release of small molecules
Authors: X Liu, Z Toprakcioglu, AJ Dear, A Levin, FS Ruggeri, CG Taylor, M Hu, ...
Journal: Macromolecular rapid communications 40 (8)

------------------------------
Atomic force microscopy for single molecule characterisation of protein aggregation
Authors: FS Ruggeri, T Šneideris, M Vendruscolo, TPJ Knowles
Journal: Archives of biochemistry and biophysics 664

------------------------------
A method of predicting the in vitro fibril formation propensity of Aβ40 mutants based on their inclusion body levels in E. coli
Authors: K Sanagavarapu, E Nüske, I Nasir, G Meisl, JN Immink, P Sormanni, ...
Journal: Scientific Reports 9 (1)

------------------------------
Physical determinants of amyloid assembly in biofilm formation
Authors: M Andreasen, G Meisl, JD Taylor, TCT Michaels, A Levin, DE Otzen, ...
Journal: MBio 10 (1)

------------------------------
Increased secondary nucleation underlies accelerated aggregation of the four-residue n-terminally truncated aβ42 species aβ5–42
Authors: T Weiffert, G Meisl, P Flagmeier, S De, CJR Dunning, B Frohm, ...
Journal: ACS chemical neuroscience 10 (5)

------------------------------
Targeting the Formation of Amyloid Oligomers using Rationally Designed Antibodies
Authors: FA Aprile, P Sormanni, M Perni, P Arosio, S Linse, TP Knowles, ...
Journal: Biophysical Journal 116 (3)

------------------------------
Improvements in or relating to flow balancing
Authors: A Douglas, T Müller, TPJ KNOWLES, CG KEMP, DP Godfrey
Journal: 

------------------------------
Trodusquemine enhances Aβ42 aggregation but suppresses its toxicity by displacing oligomers from cell membranes
Authors: R Limbocker, S Chia, FS Ruggeri, M Perni, R Cascella, GT Heller, G Meisl, ...
Journal: Nature communications 10 (1)

------------------------------
Physical determinants of amyloid assembly in biofilm formation. mBio 10: e02279-18
Authors: M Andreasen, G Meisl, JD Taylor, TCT Michaels, A Levin, DE Otzen, ...
Journal: 

------------------------------
Protein microgels from amyloid fibril networks
Authors: LWY Roode, U Shimanovich, S Wu, S Perrett, TPJ Knowles
Journal: Biological and Bio-inspired Nanomaterials: Properties and Assembly …

------------------------------
Biological and bio-inspired nanomaterials
Authors: S Perrett, AK Buell, TPJ Knowles
Journal: Springer Singapore

------------------------------
Dynamics and control of peptide self-assembly and aggregation
Authors: G Meisl, TCT Michaels, P Arosio, M Vendruscolo, CM Dobson, ...
Journal: Biological and Bio-inspired Nanomaterials: Properties and Assembly …

------------------------------
Analysis of αB-crystallin polydispersity in solution through native microfluidic electrophoresis
Authors: MA Wright, FS Ruggeri, KL Saar, PK Challa, JLP Benesch, TPJ Knowles
Journal: Analyst 144 (14)

------------------------------
Direct observation of prion protein oligomer formation reveals an aggregation mechanism with multiple conformationally distinct species
Authors: JC Sang, JE Lee, AJ Dear, S De, G Meisl, AM Thackray, R Bujdoso, ...
Journal: Chemical science 10 (17)

------------------------------
Resolving protein mixtures using microfluidic diffusional sizing combined with synchrotron radiation circular dichroism
Authors: C Bortolini, T Kartanas, D Copic, IC Morales, Y Zhang, PK Challa, Q Peter, ...
Journal: Lab on a Chip 19 (1)

------------------------------
2018

------------------------------
Mechanobiology of protein droplets: force arises from disorder
Authors: TJ Welsh, Y Shen, A Levin, TPJ Knowles
Journal: Cell 175 (6)

------------------------------
Automated behavioral analysis of large C. elegans populations using a wide field-of-view tracking platform
Authors: M Perni, S Casford, FA Aprile, EA Nollen, TPJ Knowles, M Vendruscolo, ...
Journal: JoVE (Journal of Visualized Experiments)

------------------------------
Reaction rate theory for supramolecular kinetics: Application to protein aggregation
Authors: TCT Michaels, LX Liu, S Curk, PG Bolhuis, A Šarić, TPJ Knowles
Journal: Molecular Physics 116 (21-22)

------------------------------
Microfluidic Diffusional Sizing Enables Characterisation of Protein-Protein Interactions Under Native Conditions
Authors: S Devenish, C Thorne, T Scheidt, J Carozza, P Arosio, Y Zhang, A Buell, ...
Journal: PROTEIN SCIENCE 27

------------------------------
On-Chip Measurements of Membrane Protein Interactions
Authors: Y Zhang, T Knowles, S Linse
Journal: PROTEIN SCIENCE 27

------------------------------
Quantifying co-oligomer formation by α-synuclein
Authors: M Iljina, AJ Dear, GA Garcia, S De, L Tosatto, P Flagmeier, DR Whiten, ...
Journal: ACS nano 12 (11)

------------------------------
Statistical mechanics of globular oligomer formation by protein molecules
Authors: AJ Dear, A Šarić, TCT Michaels, CM Dobson, TPJ Knowles
Journal: The Journal of Physical Chemistry B 122 (49)

------------------------------
Direct observation of murine prion protein replication in vitro
Authors: JC Sang, G Meisl, AM Thackray, L Hong, A Ponjavic, TPJ Knowles, ...
Journal: Journal of the American Chemical Society 140 (44)

------------------------------
SAR by kinetics for drug discovery in protein misfolding diseases
Authors: S Chia, J Habchi, TCT Michaels, SIA Cohen, S Linse, CM Dobson, ...
Journal: Proceedings of the National Academy of Sciences 115 (41)

------------------------------
Microfluidic deposition for resolving single-molecule protein architecture and heterogeneity
Authors: FS Ruggeri, J Charmet, T Kartanas, Q Peter, S Chia, J Habchi, ...
Journal: Nature communications 9 (1)

------------------------------
Solution fibre spinning technique for the fabrication of tuneable decellularised matrix-laden fibres and fibrous micromembranes
Authors: Z Li, J Tuffin, IM Lei, FS Ruggeri, NS Lewis, EL Gill, T Savin, L Huleihel, ...
Journal: Acta Biomaterialia 78

------------------------------
Identification of oxidative stress in red blood cells with nanoscale chemical resolution by infrared nanospectroscopy
Authors: FS Ruggeri, C Marcott, S Dinarelli, G Longo, M Girasole, G Dietler, ...
Journal: International journal of molecular sciences 19 (9)

------------------------------
Image-assisted microvessel-on-a-chip platform for studying cancer cell transendothelial migration dynamics
Authors: C Bertulli, M Gerigk, N Piano, Y Liu, D Zhang, T Müller, TJ Knowles, ...
Journal: Scientific reports 8 (1)

------------------------------
DNA-coated functional oil droplets
Authors: A Caciagli, M Zupkauskas, A Levin, TPJ Knowles, C Mugemana, N Bruns, ...
Journal: Langmuir 34 (34)

------------------------------
Self-assembly-mediated release of peptide nanoparticles through jets across microdroplet interfaces
Authors: A Levin, TCT Michaels, TO Mason, T Müller, L Adler-Abramovich, ...
Journal: ACS applied materials & interfaces 10 (33)

------------------------------
Combining affinity selection and specific ion mobility for microchip protein sensing
Authors: WE Arter, J Charmet, J Kong, KL Saar, TW Herling, T Müller, UF Keyser, ...
Journal: Analytical chemistry 90 (17)

------------------------------
Massively parallel C. elegans tracking provides multi-dimensional fingerprints for phenotypic discovery
Authors: M Perni, PK Challa, JB Kirkegaard, R Limbocker, M Koopman, ...
Journal: Journal of neuroscience methods 306

------------------------------
Extrinsic amyloid-binding dyes for detection of individual protein aggregates in solution
Authors: CG Taylor, G Meisl, MH Horrocks, H Zetterberg, TPJ Knowles, ...
Journal: Analytical chemistry 90 (17)

------------------------------
Conserved S/T residues of the human chaperone DNAJB6 are required for effective inhibition of Aβ42 amyloid fibril formation
Authors: C Mansson, RTP Van Cruchten, U Weininger, X Yang, R Cukalevski, ...
Journal: Biochemistry 57 (32)

------------------------------
Identification and nanomechanical characterization of the fundamental single-strand protofilaments of amyloid α-synuclein fibrils
Authors: FS Ruggeri, F Benedetti, TPJ Knowles, HA Lashuel, S Sekatskii, G Dietler
Journal: Proceedings of the National Academy of Sciences 115 (28)

------------------------------
Stabilization and Characterization of Cytotoxic Aβ40 Oligomers Isolated from an Aggregation Reaction in the Presence of Zinc Ions
Authors: B Mannini, J Habchi, S Chia, FS Ruggeri, M Perni, TPJ Knowles, ...
Journal: ACS chemical neuroscience 9 (12)

------------------------------
O2‐02‐02: TARGETING AMYLOID FORMATION USING RATIONALLY DESIGNED ANTIBODIES
Authors: FA Aprile, P Sormanni, M Perni, P Arosio, R Limbocker, S Chhangur, ...
Journal: Alzheimer's & Dementia 14 (7S_Part_11)

------------------------------
O3‐01‐05: IN VITRO MEASUREMENTS OF TAU AGGREGATE ELONGATION AND FRAGMENTATION RATES ALLOW THE MODELLING OF PRION‐LIKE SPREADING IN HUMANS
Authors: D Klenerman, F Kundel, B Falcon, T Knowles, M Goedert, L Hong, ...
Journal: Alzheimer's & Dementia 14 (7S_Part_19)

------------------------------
Multistep Inhibition of α-Synuclein Aggregation and Toxicity in Vitro and in Vivo by Trodusquemine
Authors: M Perni, P Flagmeier, R Limbocker, R Cascella, FA Aprile, C Galvagnion, ...
Journal: ACS chemical biology 13 (8)

------------------------------
Oligomer diversity during the aggregation of the repeat region of tau
Authors: M Kjaergaard, AJ Dear, F Kundel, S Qamar, G Meisl, TPJ Knowles, ...
Journal: ACS chemical neuroscience 9 (12)

------------------------------
PNAS PLUS
Authors: C Yang, G Meisl, B Frohm, E Thulin, TPJ Knowles, S Linse
Journal: PNAS 115 (26)

------------------------------
On the role of sidechain size and charge in the aggregation of Aβ42 with familial mutations
Authors: X Yang, G Meisl, B Frohm, E Thulin, TPJ Knowles, S Linse
Journal: Proceedings of the National Academy of Sciences 115 (26)

------------------------------
Enhancing the resolution of micro free flow electrophoresis through spatially controlled sample injection
Authors: KL Saar, T Müller, J Charmet, PK Challa, TPJ Knowles
Journal: Analytical chemistry 90 (15)

------------------------------
Determination of polypeptide conformation with nanoscale resolution in water
Authors: G Ramer, FS Ruggeri, A Levin, TPJ Knowles, A Centrone
Journal: ACS nano 12 (7)

------------------------------
Cholesterol catalyses Aβ42 aggregation through a heterogeneous nucleation pathway in the presence of lipid membranes
Authors: J Habchi, S Chia, C Galvagnion, TCT Michaels, MMJ Bellaiche, ...
Journal: Nature chemistry 10 (6)

------------------------------
Water‐Dispersible Polydopamine‐Coated Nanofibers for Stimulation of Neuronal Growth and Adhesion
Authors: S Sieste, T Mack, CV Synatschke, C Schilling, C Meyer zu Reckendorf, ...
Journal: Advanced Healthcare Materials 7 (11)

------------------------------
Budding-like division of all-aqueous emulsion droplets modulated by networks of protein nanofibrils
Authors: Y Song, TCT Michaels, Q Ma, Z Liu, H Yuan, S Takayama, TPJ Knowles, ...
Journal: Nature communications 9 (1)

------------------------------
Stochastic calculus of protein filament formation under spatial confinement
Authors: TCT Michaels, AJ Dear, TPJ Knowles
Journal: New journal of physics 20 (5)

------------------------------
Rapid growth of acetylated Aβ (16–20) into macroscopic crystals
Authors: C Bortolini, LH Klausen, SV Hoffmann, NC Jones, D Saadeh, Z Wang, ...
Journal: ACS nano 12 (6)

------------------------------
Cooperative assembly of Hsp70 subdomain clusters
Authors: MA Wright, FA Aprile, MMJ Bellaiche, TCT Michaels, T Müller, P Arosio, ...
Journal: Biochemistry 57 (26)

------------------------------
Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide
Authors: SIA Cohen, R Cukalevski, TCT Michaels, A Šarić, M Törnquist, ...
Journal: Nature chemistry 10 (5)

------------------------------
Chemical kinetics for bridging molecular mechanisms and macroscopic measurements of amyloid fibril formation
Authors: TCT Michaels, A Šarić, J Habchi, S Chia, G Meisl, M Vendruscolo, ...
Journal: Annual review of physical chemistry 69

------------------------------
FUS phase separation is modulated by a molecular chaperone and methylation of arginine cation-π interactions
Authors: S Qamar, GZ Wang, SJ Randle, FS Ruggeri, JA Varela, JQ Lin, ...
Journal: Cell 173 (3)

------------------------------
FLOW TECHNICAL ANALYSIS AND SEPARATION
Authors: T Herling, T Mueller, T Knowles
Journal: 

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Biophotonics of native silk fibrils
Authors: U Shimanovich, D Pinotsi, K Shimanovich, N Yu, S Bolisetty, J Adamcik, ...
Journal: Macromolecular bioscience 18 (4)

------------------------------
Measurement of tau filament fragmentation provides insights into prion-like spreading
Authors: F Kundel, L Hong, B Falcon, WA McEwan, TCT Michaels, G Meisl, ...
Journal: ACS chemical neuroscience 9 (6)

------------------------------
Phase Separation of FUS is Modulated by Methylation State of Cation-π Interactions and Interaction with TNPO1
Authors: S George-Hyslop, S Qamar, G Wang, SJ Randle, FS Ruggeri, J Varela, ...
Journal: Elsevier

------------------------------
Fluidic analysis and separation
Authors: T HERLING, T Mueller, T Knowles
Journal: 

------------------------------
Microfluidics for protein biophysics
Authors: J Charmet, P Arosio, TPJ Knowles
Journal: Journal of molecular biology 430 (5)

------------------------------
Direct observation of oligomerization by single molecule fluorescence reveals a multistep aggregation mechanism for the yeast prion protein Ure2
Authors: J Yang, AJ Dear, TCT Michaels, CM Dobson, TPJ Knowles, S Wu, ...
Journal: Journal of the American Chemical Society 140 (7)

------------------------------
Real-time intrinsic fluorescence visualization and sizing of proteins and protein complexes in microfluidic devices
Authors: PK Challa, Q Peter, MA Wright, Y Zhang, KL Saar, JA Carozza, ...
Journal: Analytical chemistry 90 (6)

------------------------------
Revealing the Mechanism of Amyloid Fibril Formation by Combined Single Molecule FRET and Kinetic Modeling
Authors: J Yang, AJ Dear, TCT Michaels, CM Dobson, TPJ Knowles, S Perrett, ...
Journal: Biophysical Journal 114 (3)

------------------------------
2-Photon Lithography for Nanofluidic Lab-on-Chip Devices
Authors: O Vanderpoorten, PK Challa, Q Peter, J Charmet, N Curry, TPJ Knowles, ...
Journal: Biophysical Journal 114 (3)

------------------------------
Systematic development of small molecules to inhibit specific microscopic steps of amyloid-beta42 aggregation in Alzheimer's disease
Authors: S Chia, J Habchi, R Limbocker, B Mannini, M Ahn, M Perni, O Hansson, ...
Journal: Biophysical Journal 114 (3)

------------------------------
Modulating amyloid-beta aggregation to reduce the toxicity of its oligomeric aggregates
Authors: R Limbocker, B Mannini, S Chia, FS Ruggeri, M Perni, R Cascella, C Xu, ...
Journal: Biophysical Journal 114 (3)

------------------------------
Probing the Interaction of ABETA42 Amyloid Species with an Aggregation Suppressor Molecule by Infrared Nanospectroscopy
Authors: FS Ruggeri, J Habchi, S Chia, M Vendruscolo, TPJ Knowles
Journal: Biophysical Journal 114 (3)

------------------------------
Molecular Mechanism of AB42 Peptide-Fibril Adsorption
Authors: MMJ Bellaiche, TPJ Knowles, RB Best
Journal: Biophysical Journal 114 (3)

------------------------------
Microfluidic diffusion platform for characterizing the sizes of lipid vesicles and the thermodynamics of protein–lipid interactions
Authors: H Gang, C Galvagnion, G Meisl, T Muller, M Pfammatter, AK Buell, ...
Journal: Analytical chemistry 90 (5)

------------------------------
Mimicking Dividing Cells by Assembly of Protein Structures Inside Aqueous Two-Phase Droplets
Authors: HC Shum, Y Song, T Knowles, T Michaels
Journal: Materials Research Society (MRS) Fall Meeting 2018

------------------------------
Observation of molecular self-assembly events in massively parallel microdroplet arrays
Authors: Z Toprakcioglu, PK Challa, A Levin, TPJ Knowles
Journal: Lab on a Chip 18 (21)

------------------------------
Devices and applications at the micro-and nanoscale rsc. li/loc
Authors: TW Herling, A Levin, KL Saar, CM Dobson, TPJ Knowles
Journal: Lab Chip 18 (1026)

------------------------------
Secondary nucleation in amyloid formation
Authors: M Törnquist, TCT Michaels, K Sanagavarapu, X Yang, G Meisl, ...
Journal: Chemical communications 54 (63)

------------------------------
Kinetic barriers to α-synuclein protofilament formation and conversion into mature fibrils
Authors: JWP Brown, G Meisl, TPJ Knowles, AK Buell, CM Dobson, C Galvagnion
Journal: Chemical Communications 54 (56)

------------------------------
Origin of metastable oligomers and their effects on amyloid fibril self-assembly
Authors: F Hasecke, T Miti, C Perez, J Barton, D Schölzel, L Gremer, CSR Grüning, ...
Journal: Chemical science 9 (27)

------------------------------
Kinetic analysis of amyloid formation
Authors: G Meisl, TCT Michaels, S Linse, TPJ Knowles
Journal: Amyloid Proteins: Methods and Protocols

------------------------------
C-terminal truncation of α-synuclein promotes amyloid fibril amplification at physiological pH
Authors: IM van der Wateren, TPJ Knowles, AK Buell, CM Dobson, C Galvagnion
Journal: Chemical science 9 (25)

------------------------------
Microfluidic approaches for probing amyloid assembly and behaviour
Authors: TW Herling, A Levin, KL Saar, CM Dobson, TPJ Knowles
Journal: Lab on a Chip 18 (7)

------------------------------
On-chip measurements of protein unfolding from direct observations of micron-scale diffusion
Authors: Y Zhang, EV Yates, L Hong, KL Saar, G Meisl, CM Dobson, TPJ Knowles
Journal: Chemical Science 9 (14)

------------------------------
Enhancing power density of biophotovoltaics by decoupling storage and power delivery
Authors: KL Saar, P Bombelli, DJ Lea-Smith, T Call, EM Aro, T Müller, CJ Howe, ...
Journal: Nature energy 3 (1)

------------------------------
On-chip label-free protein analysis with downstream electrodes for direct removal of electrolysis products
Authors: KL Saar, Y Zhang, T Müller, CP Kumar, S Devenish, A Lynn, U Łapińska, ...
Journal: Lab on a Chip 18 (1)

------------------------------
2017

------------------------------
Mechanism of biosurfactant adsorption to oil/water interfaces from millisecond scale tensiometry measurements
Authors: L Kong, KL Saar, R Jacquat, L Hong, A Levin, H Gang, R Ye, B Mu, ...
Journal: Interface Focus 7 (6)

------------------------------
Nanoscale click-reactive scaffolds from peptide self-assembly
Authors: APM Guttenplan, LJ Young, D Matak-Vinkovic, CF Kaminski, TPJ Knowles, ...
Journal: Journal of Nanobiotechnology 15 (1)

------------------------------
Nanobodies raised against monomeric ɑ-synuclein inhibit fibril formation and destabilize toxic oligomeric species
Authors: M Iljina, L Hong, MH Horrocks, MH Ludtmann, ML Choi, CD Hughes, ...
Journal: BMC biology 15

------------------------------
Enhanced quality factor label-free biosensing with micro-cantilevers integrated into microfluidic systems
Authors: T Kartanas, V Ostanin, PK Challa, R Daly, J Charmet, TPJ Knowles
Journal: Analytical chemistry 89 (22)

------------------------------
Absolute quantification of amyloid propagons by digital microfluidics
Authors: M Pfammatter, M Andreasen, G Meisl, CG Taylor, J Adamcik, S Bolisetty, ...
Journal: Analytical chemistry 89 (22)

------------------------------
Hierarchical biomolecular emulsions using 3-D microfluidics with uniform surface chemistry
Authors: Z Toprakcioglu, A Levin, TPJ Knowles
Journal: Biomacromolecules 18 (11)

------------------------------
Thermodynamics of polypeptide supramolecular assembly in the short-chain limit
Authors: TO Mason, TCT Michaels, A Levin, CM Dobson, E Gazit, TPJ Knowles, ...
Journal: Journal of the American Chemical Society 139 (45)

------------------------------
Sequential release of proteins from structured multishell microcapsules
Authors: U Shimanovich, TCT Michaels, E De Genst, D Matak-Vinkovic, ...
Journal: Biomacromolecules 18 (10)

------------------------------
Kinetic constraints on self-assembly into closed supramolecular structures
Authors: TCT Michaels, MMJ Bellaiche, MF Hagan, TPJ Knowles
Journal: Scientific reports 7 (1)

------------------------------
Monomeric and fibrillar α-synuclein exert opposite effects on the catalytic cycle that promotes the proliferation of Aβ42 aggregates
Authors: S Chia, P Flagmeier, J Habchi, V Lattanzi, S Linse, CM Dobson, ...
Journal: Proceedings of the National Academy of Sciences 114 (30)

------------------------------
Silk micrococoons for protein stabilisation and molecular encapsulation
Authors: U Shimanovich, FS Ruggeri, E De Genst, J Adamcik, TP Barros, D Porter, ...
Journal: Nature communications 8 (1)

------------------------------
Method of identifying novel protein aggregation inhibitors based on chemical kinetics
Authors: C Dobson, T Knowles, M Vendruscolo, J Habchi, C Sean
Journal: 

------------------------------
Protein capsules
Authors: T Knowles, U Shimanovich, C Dobson, D Weitz
Journal: 

------------------------------
Silk micrococoons for protein stabilisation and molecular encapsulation
Authors: F Vollrath, D Porter, U Shimanovich, S Ruggeri, E de Genst, J Adamcik, ...
Journal: Nature Communications 8

------------------------------
Evidence for self-replication of Alzheimer-associated A beta 42 amyloid along the sides of fibrils
Authors: M Tornquist, R Cukalevski, U Weininger, G Meisl, TPJ Knowles, T Leiding, ...
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 46

------------------------------
Measuring the prion-like character of tau by TIRF microscopy
Authors: F Kundel, B Falcon, L Hong, N Esteras, AJ Dear, AY Abramov, ...
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 46

------------------------------
Single amyloid aggregates chemical and structural analysis by infrared nanospectroscopy
Authors: FS Ruggeri, J Habchi, C Sean, M Vendruscolo, TPJ Knowles
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 46

------------------------------
Mechanisms of Amyloid-beta 42 oligomer formation from kinetic analysis
Authors: TC Michaels, A Saric, HW Lazell, P Arosio, M Vendruscolo, CM Dobson, ...
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 46

------------------------------
A microfluidic platform for quantitative protein studies
Authors: TW Herling, P Arosio, T Mueller, DJ O'Connell, MC Bauer, J Persson, ...
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 46

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Self‐assembled Protein Fibril‐metal Oxide Nanocomposites
Authors: A Levin, TO Mason, TPJ Knowles, U Shimanovich
Journal: Israel Journal of Chemistry 57 (7-8)

------------------------------
Ultrasensitive Measurement of Ca2+ Influx into Lipid Vesicles Induced by Protein Aggregates
Authors: P Flagmeier, S De, DC Wirthensohn, SF Lee, C Vincke, S Muyldermans, ...
Journal: Angewandte Chemie International Edition 56 (27)

------------------------------
Selective targeting of primary and secondary nucleation pathways in Aβ42 aggregation using a rational antibody scanning method
Authors: FA Aprile, P Sormanni, M Perni, P Arosio, S Linse, TPJ Knowles, ...
Journal: Science advances 3 (6)

------------------------------
Phage display and kinetic selection of antibodies that specifically inhibit amyloid self-replication
Authors: A Munke, J Persson, T Weiffert, E De Genst, G Meisl, P Arosio, ...
Journal: Proceedings of the National Academy of Sciences 114 (25)

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Intra-chain organisation of hydrophobic residues controls inter-chain aggregation rates of amphiphilic polymers
Authors: P Varilly, AP Willard, JB Kirkegaard, TPJ Knowles, D Chandler
Journal: The Journal of Chemical Physics 146 (13)

------------------------------
Acceleration of α-synuclein aggregation
Authors: R Gaspar, G Meisl, AK Buell, L Young, CF Kaminski, TPJ Knowles, ...
Journal: Amyloid 24 (sup1)

------------------------------
Exciton coupling of phenylalanine reveals conformational changes of cationic peptides
Authors: C Bortolini, L Liu, SV Hoffmann, NC Jones, TPJ Knowles, M Dong
Journal: ChemistrySelect 2 (8)

------------------------------
Physical principles of filamentous protein self-assembly kinetics
Authors: TCT Michaels, LX Liu, G Meisl, TPJ Knowles
Journal: Journal of Physics: Condensed Matter 29 (15)

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Inhibition of α-synuclein fibril elongation by Hsp70 is governed by a kinetic binding competition between α-synuclein species
Authors: FA Aprile, P Arosio, G Fusco, SW Chen, JR Kumita, A Dhulesia, P Tortora, ...
Journal: Biochemistry 56 (9)

------------------------------
A natural product inhibits the initiation of α-synuclein aggregation and suppresses its toxicity
Authors: M Perni, C Galvagnion, A Maltsev, G Meisl, MBD Müller, PK Challa, ...
Journal: Proceedings of the National Academy of Sciences 114 (6)

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Attenuating the Toxicity of Amyloid-Beta Aggregation with Specific Species
Authors: R Limbocker, B Mannini, M Perni, S Chia, G Heller, FS Ruggeri, J Habchi, ...
Journal: Biophysical Journal 112 (3)

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Systematic development of small molecules to inhibit specific microscopic steps of Aβ42 aggregation in Alzheimer's disease
Authors: J Habchi, S Chia, R Limbocker, B Mannini, M Ahn, M Perni, O Hansson, ...
Journal: Proceedings of the National Academy of Sciences 114 (2)

------------------------------
Scaling behaviour and rate-determining steps in filamentous self-assembly
Authors: G Meisl, L Rajah, SAI Cohen, M Pfammatter, A Šarić, E Hellstrand, ...
Journal: Chemical Science 8 (10)

------------------------------
Gradient-free determination of isoelectric points of proteins on chip
Authors: U Łapińska, KL Saar, EV Yates, TW Herling, T Müller, PK Challa, ...
Journal: Physical Chemistry Chemical Physics 19 (34)

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Secondary nucleation of monomers on fibril surface dominates α-synuclein aggregation and provides autocatalytic amyloid amplification
Authors: R Gaspar, G Meisl, AK Buell, L Young, CF Kaminski, TPJ Knowles, ...
Journal: Quarterly reviews of biophysics 50

------------------------------
Microfluidic devices fabricated using fast wafer-scale LED-lithography patterning
Authors: PK Challa, T Kartanas, J Charmet, TPJ Knowles
Journal: Biomicrofluidics 11 (1)

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Modulation of electrostatic interactions to reveal a reaction network unifying the aggregation behaviour of the Aβ42 peptide and its variants
Authors: G Meisl, X Yang, CM Dobson, S Linse, TPJ Knowles
Journal: Chemical science 8 (6)

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2016

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Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation
Authors: A Šarić, TCT Michaels, A Zaccone, TPJ Knowles, D Frenkel
Journal: The Journal of Chemical Physics 145 (21)

------------------------------
Dynamics of heteromolecular filament formation
Authors: AJ Dear, TCT Michaels, TPJ Knowles
Journal: The Journal of Chemical Physics 145 (17)

------------------------------
β-Synuclein suppresses both the initiation and amplification steps of α-synuclein aggregation via competitive binding to surfaces
Authors: JWP Brown, AK Buell, TCT Michaels, G Meisl, J Carozza, P Flagmeier, ...
Journal: Scientific reports 6 (1)

------------------------------
Dynamic microfluidic control of supramolecular peptide self-assembly
Authors: ZA Arnon, A Vitalis, A Levin, TCT Michaels, A Caflisch, TPJ Knowles, ...
Journal: Nature communications 7 (1)

------------------------------
Protein Aggregate‐Ligand Binding Assays Based on Microfluidic Diffusional Separation
Authors: Y Zhang, AK Buell, T Müller, E De Genst, J Benesch, CM Dobson, ...
Journal: ChemBioChem 17 (20)

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Fabrication of fibrillosomes from droplets stabilized by protein nanofibrils at all-aqueous interfaces
Authors: Y Song, U Shimanovich, TCT Michaels, Q Ma, J Li, TPJ Knowles, ...
Journal: Nature Communications 7 (1)

------------------------------
Scaling and dimensionality in the chemical kinetics of protein filament formation
Authors: TCT Michaels, AJ Dear, TPJ Knowles
Journal: International Reviews in Physical Chemistry 35 (4)

------------------------------
Elastic instability-mediated actuation by a supra-molecular polymer
Authors: A Levin, TCT Michaels, L Adler-Abramovich, TO Mason, T Mueller, ...
Journal: Nature Physics 12 (10)

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Kinetics of fragmentation and dissociation of two-strand protein filaments: Coarse-grained simulations and experiments
Authors: A Zaccone, I Terentjev, TW Herling, TPJ Knowles, A Aleksandrova, ...
Journal: The Journal of Chemical Physics 145 (10)

------------------------------
Mutations associated with familial Parkinson's disease alter the initiation and amplification steps of α-synuclein aggregation
Authors: P Flagmeier, G Meisl, M Vendruscolo, TPJ Knowles, CM Dobson, ...
Journal: Proceedings of the National Academy of Sciences 113 (37)

------------------------------
Physical determinants of the self-replication of protein fibrils
Authors: A Šarić, AK Buell, G Meisl, TCT Michaels, CM Dobson, S Linse, ...
Journal: Nature physics 12 (9)

------------------------------
Controlling the physical dimensions of peptide nanotubes by supramolecular polymer coassembly
Authors: L Adler-Abramovich, P Marco, ZA Arnon, RCG Creasey, TCT Michaels, ...
Journal: ACS nano 10 (8)

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Synthesis of nonequilibrium supramolecular peptide polymers on a microfluidic platform
Authors: TO Mason, TCT Michaels, A Levin, E Gazit, CM Dobson, AK Buell, ...
Journal: Journal of the American Chemical Society 138 (30)

------------------------------
Amyloid fibrils as building blocks for natural and artificial functional materials
Authors: TPJ Knowles, R Mezzenga
Journal: Advanced materials 28 (31)

------------------------------
Analysis of the length distribution of amyloid fibrils by centrifugal sedimentation
Authors: P Arosio, T Cedervall, TPJ Knowles, S Linse
Journal: Analytical Biochemistry 504

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Quantifying measurement fluctuations from stochastic surface processes on sensors with heterogeneous sensitivity
Authors: J Charmet, TCT Michaels, R Daly, A Prasad, P Thiruvenkathanathan, ...
Journal: Physical Review Applied 5 (6)

------------------------------
Quantitative analysis of co-oligomer formation by amyloid-beta peptide isoforms
Authors: M Iljina, GA Garcia, AJ Dear, J Flint, P Narayan, TCT Michaels, ...
Journal: Scientific reports 6 (1)

------------------------------
Research Data Supporting" Quantifying measurement fluctuations from stochastic surface processes on sensors with heterogeneous sensitivity"
Authors: J Charmet, TCT Michaels, R Daly, A Prasad, P Thiruvenkathanathan, ...
Journal: University of Cambridge

------------------------------
Fluctuations in the kinetics of linear protein self-assembly
Authors: TCT Michaels, AJ Dear, JB Kirkegaard, KL Saar, DA Weitz, TPJ Knowles
Journal: Physical review letters 116 (25)

------------------------------
Particle-based Monte-Carlo simulations of steady-state mass transport at intermediate Péclet numbers
Authors: T Müller, P Arosio, L Rajah, SIA Cohen, EV Yates, M Vendruscolo, ...
Journal: International Journal of Nonlinear Sciences and Numerical Simulation 17 (3-4 …

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A microfluidic platform for real-time detection and quantification of protein-ligand interactions
Authors: TW Herling, DJ O'Connell, MC Bauer, J Persson, U Weininger, ...
Journal: Biophysical journal 110 (9)

------------------------------
Self-assembly of MPG1, a hydrophobin protein from the rice blast fungus that forms functional amyloid coatings, occurs by a surface-driven mechanism
Authors: CLL Pham, A Rey, V Lo, M Soulès, Q Ren, G Meisl, TPJ Knowles, ...
Journal: Scientific reports 6 (1)

------------------------------
Electrostatically-guided inhibition of Curli amyloid nucleation by the CsgC-like family of chaperones
Authors: JD Taylor, WJ Hawthorne, J Lo, A Dear, N Jain, G Meisl, M Andreasen, ...
Journal: Scientific Reports 6 (1)

------------------------------
The S/T-rich motif in the DNAJB6 chaperone delays polyglutamine aggregation and the onset of disease in a mouse model
Authors: V Kakkar, C Månsson, EP de Mattos, S Bergink, M van Der Zwaag, ...
Journal: Molecular cell 62 (2)

------------------------------
Research data supporting" Physical determinants for the self-replication of protein fibrils"
Authors: A Šarić, AK Buell, G Meisl, T Michaels, CM Dobson, S Linse, TPJ Knowles, ...
Journal: University of Cambridge

------------------------------
Microfluidic diffusion viscometer for rapid analysis of complex solutions
Authors: P Arosio, K Hu, FA Aprile, T Müller, TPJ Knowles
Journal: Analytical chemistry 88 (7)

------------------------------
Kinetic analysis reveals the diversity of microscopic mechanisms through which molecular chaperones suppress amyloid formation
Authors: P Arosio, TCT Michaels, S Linse, C Månsson, C Emanuelsson, J Presto, ...
Journal: Nature communications 7 (1)

------------------------------
Quantitative thermophoretic study of disease-related protein aggregates
Authors: M Wolff, JJ Mittag, TW Herling, ED Genst, CM Dobson, TPJ Knowles, ...
Journal: Scientific reports 6 (1)

------------------------------
A fragment-based method of creating small-molecule libraries to target the aggregation of intrinsically disordered proteins
Authors: P Joshi, S Chia, J Habchi, TPJ Knowles, CM Dobson, M Vendruscolo
Journal: ACS combinatorial science 18 (3)

------------------------------
Silk protein structures
Authors: T Knowles, U Shimanovich, C Holland
Journal: 

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An environmentally sensitive fluorescent dye as a multidimensional probe of amyloid formation
Authors: EV Yates, G Meisl, TPJ Knowles, CM Dobson
Journal: The Journal of Physical Chemistry B 120 (9)

------------------------------
Kinetic model of the aggregation of alpha-synuclein provides insights into prion-like spreading
Authors: M Iljina, GA Garcia, MH Horrocks, L Tosatto, ML Choi, KA Ganzinger, ...
Journal: Proceedings of the National Academy of Sciences 113 (9)

------------------------------
Oligomers of heat-shock proteins: structures that don't imply function
Authors: WM Jacobs, TPJ Knowles, D Frenkel
Journal: PLoS computational biology 12 (2)

------------------------------
Combining Single-Molecule Techniques with Microfluidics for Protein Analysis
Authors: C Taylor, T Knowles, D Klenerman
Journal: Biophysical Journal 110 (3)

------------------------------
Consistent treatment of hydrophobicity in protein lattice models accounts for cold denaturation
Authors: E Van Dijk, P Varilly, TPJ Knowles, D Frenkel, S Abeln
Journal: Physical review letters 116 (7)

------------------------------
An anticancer drug suppresses the primary nucleation reaction that initiates the production of the toxic Aβ42 aggregates linked with Alzheimer's disease
Authors: J Habchi, P Arosio, M Perni, AR Costa, M Yagi-Utsumi, P Joshi, S Chia, ...
Journal: Science advances 2 (2)

------------------------------
Fluidic analysis and separation
Authors: T Knowles, T Mueller, T Herling
Journal: 

------------------------------
Automated ex situ assays of amyloid formation on a microfluidic platform
Authors: KL Saar, EV Yates, T Müller, S Saunier, CM Dobson, TPJ Knowles
Journal: Biophysical Journal 110 (3)

------------------------------
Molecular mechanisms of protein aggregation from global fitting of kinetic models
Authors: G Meisl, JB Kirkegaard, P Arosio, TCT Michaels, M Vendruscolo, ...
Journal: Nature protocols 11 (2)

------------------------------
Microfluidic diffusion analysis of the sizes and interactions of proteins under native solution conditions
Authors: P Arosio, T Müller, L Rajah, EV Yates, FA Aprile, Y Zhang, SIA Cohen, ...
Journal: ACS nano 10 (1)

------------------------------
Hamiltonian dynamics of protein filament formation
Authors: TCT Michaels, SIA Cohen, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: Physical review letters 116 (3)

------------------------------
Quantitative analysis of intrinsic and extrinsic factors in the aggregation mechanism of Alzheimer-associated Aβ-peptide
Authors: G Meisl, X Yang, B Frohm, TPJ Knowles, S Linse
Journal: Scientific reports 6 (1)

------------------------------
Micro-and nanoscale hierarchical structure of core–shell protein microgels
Authors: U Shimanovich, FS Ruggeri, S Bolisetty, T Müller, TO Mason, ...
Journal: Journal of materials chemistry B 4 (48)

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Micro-and nanoscale hierarchical structure of core–shell protein microgels
Authors: LR Volpatti, U Shimanovich, FS Ruggeri, S Bolisetty, T Müller, TO Mason, ...
Journal: Journal of Materials Chemistry B 4 (48)

------------------------------
Elastic instability-mediated actuation by a supra-molecular polymer
Authors: T Müller, B Zhang, L Mahadevan, E Gazit, TPJ Knowles
Journal: 

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2015

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N-terminal extensions retard Aβ42 fibril formation but allow cross-seeding and coaggregation with Aβ42
Authors: O Szczepankiewicz, B Linse, G Meisl, E Thulin, B Frohm, C Sala Frigerio, ...
Journal: Journal of the American Chemical Society 137 (46)

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Single-molecule FRET studies on alpha-synuclein oligomerization of Parkinson's disease genetically related mutants
Authors: L Tosatto, MH Horrocks, AJ Dear, TPJ Knowles, M Dalla Serra, ...
Journal: Scientific reports 5 (1)

------------------------------
The length distribution of frangible biofilaments
Authors: TCT Michaels, P Yde, JCW Willis, MH Jensen, D Otzen, CM Dobson, ...
Journal: The Journal of chemical physics 143 (16)

------------------------------
Particle-based simulations of steady-state mass transport at high P'eclet numbers
Authors: T Müller, P Arosio, L Rajah, SIA Cohen, EV Yates, M Vendruscolo, ...
Journal: arXiv preprint arXiv:1510.05126

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New Insights into Individual Amyloid Aggregates Structure by Infrared Nanospectroscopy
Authors: FS Ruggeri, S Vieweg, G Longo, T Knowles, H Lashuel, G Dietler
Journal: FTIR Spectroscopy in Microbiological and Medical Diagnostics

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Sizing and interactions of proteins under native conditions from microfluidic diffusion measurements: application to molecular chaperones and single-step immunoassay
Authors: P Arosio, T Mueller, L Rajah, F Aprile, T Scheidt, J Carrozza, M Wright, ...
Journal: PROTEIN SCIENCE 24

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Latent analysis of unmodified biomolecules and their complexes in solution with attomole detection sensitivity
Authors: EV Yates, T Müller, L Rajah, EJ De Genst, P Arosio, S Linse, ...
Journal: Nature chemistry 7 (10)

------------------------------
Fast flow microfluidics and single-molecule fluorescence for the rapid characterization of α-synuclein oligomers
Authors: MH Horrocks, L Tosatto, AJ Dear, GA Garcia, M Iljina, N Cremades, ...
Journal: Analytical chemistry 87 (17)

------------------------------
Molecular rotors provide insights into microscopic structural changes during protein aggregation
Authors: AJ Thompson, TW Herling, M Kubánková, A Vyšniauskas, TPJ Knowles, ...
Journal: The Journal of Physical Chemistry B 119 (32)

------------------------------
Dynamics of protein aggregation and oligomer formation governed by secondary nucleation
Authors: TCT Michaels, HW Lazell, P Arosio, TPJ Knowles
Journal: The Journal of chemical physics 143 (5)

------------------------------
Force generation by the growth of amyloid aggregates
Authors: TW Herling, GA Garcia, TCT Michaels, W Grentz, J Dean, U Shimanovich, ...
Journal: Proceedings of the National Academy of Sciences 112 (31)

------------------------------
Rapid sizing of proteins in complex solutions
Authors: P Arosio, T Muller, L Rajah, EV Yates, FA Aprile, SIA Cohen, DA White, ...
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44

------------------------------
Crucial role of non-specific interactions in amyloid nucleation
Authors: A Saric, YC Chebaro, TPJ Knowles, D Frenkel
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44

------------------------------
New insights into the mechanism of amyloid formation by alpha-synuclein
Authors: AK Buell, C Galvagnion, CM Dobson, TPJ Knowles
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44

------------------------------
Enzymatically active microgels from self-assembling protein nanofibrils for microflow chemistry
Authors: XM Zhou, U Shimanovich, TW Herling, S Wu, CM Dobson, TPJ Knowles, ...
Journal: ACS nano 9 (6)

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Aggregation‐Prone Amyloid‐β⋅ CuII Species Formed on the Millisecond Timescale under Mildly Acidic Conditions
Authors: JT Pedersen, CB Borg, TCT Michaels, TPJ Knowles, P Faller, K Teilum, ...
Journal: ChemBioChem 16 (9)

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Neuronal Cx3cr1 deficiency protects against amyloid β-induced neurotoxicity
Authors: J Dworzak, B Renvoisé, J Habchi, EV Yates, C Combadière, TP Knowles, ...
Journal: PloS one 10 (6)

------------------------------
Fluidic separation and detection
Authors: E YATES, C Dobson, T HERLING, T Knowles
Journal: 

------------------------------
A mechanistic model of tau amyloid aggregation based on direct observation of oligomers
Authors: SL Shammas, GA Garcia, S Kumar, M Kjaergaard, MH Horrocks, N Shivji, ...
Journal: Nature communications 6 (1)

------------------------------
Preventing peptide and protein misbehavior
Authors: P Arosio, G Meisl, M Andreasen, TPJ Knowles
Journal: Proceedings of the National Academy of Sciences 112 (17)

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Structural characterization of toxic oligomers that are kinetically trapped during α-synuclein fibril formation
Authors: SW Chen, S Drakulic, E Deas, M Ouberai, FA Aprile, R Arranz, S Ness, ...
Journal: Proceedings of the National Academy of Sciences 112 (16)

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Tetracycline Nanoparticles as Antibacterial and Gene‐Silencing Agents
Authors: U Shimanovich, A Lipovsky, D Eliaz, S Zigdon, TPJ Knowles, Y Nitzan, ...
Journal: Advanced healthcare materials 4 (5)

------------------------------
Multiphase protein microgels
Authors: U Shimanovich, Y Song, J Brujic, HC Shum, TPJ Knowles
Journal: Macromolecular bioscience 15 (4)

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The physical basis of protein misfolding disorders
Authors: TPJ Knowles, M Vendruscolo, CM Dobson
Journal: Physics today 68 (3)

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A molecular chaperone breaks the catalytic cycle that generates toxic Aβ oligomers
Authors: SIA Cohen, P Arosio, J Presto, FR Kurudenkandy, H Biverstål, L Dolfe, ...
Journal: Nature structural & molecular biology 22 (3)

------------------------------
Lipid vesicles trigger α-synuclein aggregation by stimulating primary nucleation
Authors: C Galvagnion, AK Buell, G Meisl, TCT Michaels, M Vendruscolo, ...
Journal: Nature chemical biology 11 (3)

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Microfluidic free-flow electrophoresis for the discovery and characterisation of calmodulin binding partners
Authors: T Herling, S Linse, T Knowles
Journal: APS March Meeting Abstracts 2015

------------------------------
Kinetics of protein aggregation
Authors: T Knowles
Journal: APS March Meeting Abstracts 2015

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Protein microgels from amyloid fibril networks
Authors: U Shimanovich, I Efimov, TO Mason, P Flagmeier, AK Buell, A Gedanken, ...
Journal: ACS nano 9 (1)

------------------------------
Kinetic theory of protein filament growth: Self-consistent methods and perturbative techniques
Authors: TCT Michaels, TPJ Knowles
Journal: International Journal of Modern Physics B 29 (02)

------------------------------
Biophysical approaches for the study of interactions between molecular chaperones and protein aggregates
Authors: MA Wright, FA Aprile, P Arosio, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: Chemical communications 51 (77)

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The Aβ40 and Aβ42 peptides self-assemble into separate homomolecular fibrils in binary mixtures but cross-react during primary nucleation
Authors: R Cukalevski, X Yang, G Meisl, U Weininger, K Bernfur, B Frohm, ...
Journal: Chemical science 6 (7)

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A microfluidic platform for quantitative measurements of effective protein charges and single ion binding in solution
Authors: TW Herling, P Arosio, T Müller, S Linse, TPJ Knowles
Journal: Physical Chemistry Chemical Physics 17 (18)

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On the lag phase in amyloid fibril formation
Authors: P Arosio, TPJ Knowles, S Linse
Journal: Physical Chemistry Chemical Physics 17 (12)

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A high power‐density, mediator‐free, microfluidic biophotovoltaic device for cyanobacterial cells
Authors: P Bombelli, T Müller, TW Herling, CJ Howe, TPJ Knowles
Journal: Advanced energy materials 5 (2)

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2014

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Crucial role of nonspecific interactions in amyloid nucleation
Authors: A Šarić, YC Chebaro, TPJ Knowles, D Frenkel
Journal: Proceedings of the National Academy of Sciences 111 (50)

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Easyworm: an open-source software tool to determine the mechanical properties of worm-like chains
Authors: G Lamour, JB Kirkegaard, H Li, TPJ Knowles, J Gsponer
Journal: Source code for biology and medicine 9 (1)

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Dry-mass sensing for microfluidics
Authors: T Müller, DA White, TPJ Knowles
Journal: Applied Physics Letters 105 (21)

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Ostwald's rule of stages governs structural transitions and morphology of dipeptide supramolecular polymers
Authors: A Levin, TO Mason, L Adler-Abramovich, AK Buell, G Meisl, C Galvagnion, ...
Journal: Nature communications 5 (1)

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Interaction of the molecular chaperone DNAJB6 with growing amyloid-beta 42 (Aβ42) aggregates leads to sub-stoichiometric inhibition of amyloid formation
Authors: C Månsson, P Arosio, R Hussein, HH Kampinga, RM Hashem, ...
Journal: Journal of Biological Chemistry 289 (45)

------------------------------
The physical chemistry of the amyloid phenomenon: thermodynamics and kinetics of filamentous protein aggregation
Authors: AK Buell, CM Dobson, TPJ Knowles
Journal: Essays in biochemistry 56

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Amyloid Beta Peptide A beta 40 and A beta 42 Form Separate Fibrils in Binary Mixtures
Authors: X Yang, R Cukalevski, G Meisl, B Frohm, T Knowles, S Linse
Journal: PROTEIN SCIENCE 23

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Differences in nucleation behavior underlie the contrasting aggregation kinetics of the Aβ40 and Aβ42 peptides
Authors: G Meisl, X Yang, E Hellstrand, B Frohm, JB Kirkegaard, SIA Cohen, ...
Journal: Proceedings of the National Academy of Sciences 111 (26)

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Self‐assembly of amyloid fibrils that display active enzymes
Authors: XM Zhou, A Entwistle, H Zhang, AP Jackson, TO Mason, U Shimanovich, ...
Journal: ChemCatChem 6 (7)

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Role of filament annealing in the kinetics and thermodynamics of nucleated polymerization
Authors: TCT Michaels, TPJ Knowles
Journal: The Journal of chemical physics 140 (21)

------------------------------
The amyloid state and its association with protein misfolding diseases
Authors: TPJ Knowles, M Vendruscolo, CM Dobson
Journal: Nature reviews Molecular cell biology 15 (6)

------------------------------
Solution conditions determine the relative importance of nucleation and growth processes in α-synuclein aggregation
Authors: AK Buell, C Galvagnion, R Gaspar, E Sparr, M Vendruscolo, TPJ Knowles, ...
Journal: Proceedings of the National Academy of Sciences 111 (21)

------------------------------
Asymptotic solutions of the Oosawa model for the length distribution of biofilaments
Authors: TCT Michaels, GA Garcia, TPJ Knowles
Journal: The Journal of chemical physics 140 (19)

------------------------------
Density-gradient-free microfluidic centrifugation for analytical and preparative separation of nanoparticles
Authors: P Arosio, T Müller, L Mahadevan, TPJ Knowles
Journal: Nano letters 14 (5)

------------------------------
Fluidic device
Authors: S Cohen, T Knowles, C Dobson, L RAJAH, D White
Journal: 

------------------------------
Mean-field master equation formalism for biofilament growth
Authors: TCT Michaels, TPJ Knowles
Journal: American Journal of Physics 82 (5)

------------------------------
Nucleation-conversion-polymerization reactions of biological macromolecules with prenucleation clusters
Authors: GA Garcia, SIA Cohen, CM Dobson, TPJ Knowles
Journal: Physical Review E 89 (3)

------------------------------
The role of stable α-synuclein oligomers in the molecular events underlying amyloid formation
Authors: N Lorenzen, SB Nielsen, AK Buell, JD Kaspersen, P Arosio, BS Vad, ...
Journal: Journal of the American Chemical Society 136 (10)

------------------------------
Spatial propagation of protein polymerization
Authors: SIA Cohen, L Rajah, CH Yoon, AK Buell, DA White, RA Sperling, ...
Journal: Physical Review Letters 112 (9)

------------------------------
Quantitative sensing of microviscosity in protocells and amyloid materials using fluorescence lifetime imaging of molecular rotors
Authors: AJ Thompson, TYD Tang, TW Herling, CRC Hak, S Mann, TPJ Knowles, ...
Journal: Imaging

------------------------------
Chemical kinetics for drug discovery to combat protein aggregation diseases
Authors: P Arosio, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: Trends in pharmacological sciences 35 (3)

------------------------------
Dynamic renormalisation group reveals sequential mechanism of the secondary nucleation of proteins
Authors: T Michaels, P Arosio, T Knowles
Journal: APS March Meeting Abstracts 2014

------------------------------
Expanding the solvent chemical space for self-assembly of dipeptide nanostructures
Authors: TO Mason, DY Chirgadze, A Levin, L Adler-Abramovich, E Gazit, ...
Journal: ACS nano 8 (2)

------------------------------
Single Point Mutations Induce a Switch in the Molecular Mechanism of the Aggregation of the Alzheimer's Disease Associated Aβ42 Peptide
Authors: B Bolognesi, SIA Cohen, P Aran Terol, EK Esbjörner, S Giorgetti, ...
Journal: ACS Chemical Biology 9 (2)

------------------------------
Quantitative Analysis of Diffusive Reactions at the Solid–Liquid Interface in Finite Systems
Authors: TCT Michaels, AK Buell, EM Terentjev, TPJ Knowles
Journal: The Journal of Physical Chemistry Letters 5 (4)

------------------------------
Polymer physics inspired approaches for the study of the mechanical properties of amyloid fibrils
Authors: LR Volpatti, TPJ Knowles
Journal: Journal of Polymer Science Part B: Polymer Physics 52 (4)

------------------------------
Targeting the intrinsically disordered structural ensemble of α-synuclein by small molecules as a potential therapeutic strategy for Parkinson's disease
Authors: G Toth, SJ Gardai, W Zago, CW Bertoncini, N Cremades, SL Roy, ...
Journal: PloS one 9 (2)

------------------------------
Determination of Primary Nucleation Mechanisms of α-Synuclein Amyloid Aggregation
Authors: FA Aprile, G Meisl, AK Buell, P Flagmeier, CM Dobson, M Vendruscolo, ...
Journal: Biophysical Journal 106 (2)

------------------------------
Insights into the Inhibition Mechanism of Biomolecular Self-Assembly from Chemical Kinetics
Authors: P Arosio, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: Biophysical Journal 106 (2)

------------------------------
Quantification of the concentration of Aβ42 propagons during the lag phase by an amyloid chain reaction assay
Authors: P Arosio, R Cukalevski, B Frohm, TPJ Knowles, S Linse
Journal: Journal of the American Chemical Society 136 (1)

------------------------------
Interaction of the molecular chaperone DNAJB6 with growing amyloid-beta 42 (Abeta42) aggregates leads to sub-stoichiometric inhibition of amyloid formation
Authors: C Mansson, P Arosio, R Hussein, HH Kampinga, RM Hashem, ...
Journal: 

------------------------------
Diffuse transition state structure for the unfolding of a leucine-rich repeat protein
Authors: SE Kelly, G Meisl, PJE Rowling, SH McLaughlin, T Knowles, LS Itzhaki
Journal: Physical Chemistry Chemical Physics 16 (14)

------------------------------
Sonochemically-induced spectral shift as a probe of green fluorescent protein release from nano capsules
Authors: U Shimanovich, A Munder, NG Azoia, A Cavaco-Paulo, A Gruzman, ...
Journal: RSC Advances 4 (20)

------------------------------
Nanoscale spatially resolved infrared spectra from single microdroplets
Authors: T Müller, FS Ruggeri, AJ Kulik, U Shimanovich, TO Mason, TPJ Knowles, ...
Journal: Lab on a Chip 14 (7)

------------------------------
Protein micro-and nano-capsules for biomedical applications
Authors: U Shimanovich, GJL Bernardes, TPJ Knowles, A Cavaco-Paulo
Journal: Chemical Society Reviews 43 (5)

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2013

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A clear view of polymorphism, twist, and chirality in amyloid fibril formation
Authors: LR Volpatti, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: ACS nano 7 (12)

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Three-dimensional domain swapping and supramolecular protein assembly: insights from the X-ray structure of a dimeric swapped variant of human pancreatic RNase
Authors: A Pica, A Merlino, AK Buell, TPJ Knowles, E Pizzo, G D'Alessio, F Sica, ...
Journal: Acta Crystallographica Section D: Biological Crystallography 69 (10)

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Single-molecule measurements of transient biomolecular complexes through microfluidic dilution
Authors: MH Horrocks, L Rajah, P Jönsson, M Kjaergaard, M Vendruscolo, ...
Journal: Analytical chemistry 85 (14)

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Proliferation of amyloid-β42 aggregates occurs through a secondary nucleation mechanism
Authors: SIA Cohen, S Linse, LM Luheshi, E Hellstrand, DA White, L Rajah, ...
Journal: Proceedings of the National Academy of Sciences 110 (24)

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Integration and characterization of solid wall electrodes in microfluidic devices fabricated in a single photolithography step
Authors: TW Herling, T Müller, L Rajah, JN Skepper, M Vendruscolo, TPJ Knowles
Journal: Applied physics letters 102 (18)

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Influence of specific HSP70 domains on fibril formation of the yeast prion protein Ure2
Authors: LQ Xu, S Wu, AK Buell, SIA Cohen, LJ Chen, WH Hu, SA Cusack, ...
Journal: Philosophical Transactions of the Royal Society B: Biological Sciences 368 …

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Amyloid beta-protein: the influence of intrinsic and extrinsic factors on fibril formation
Authors: R Cukalevski, X Yang, SI Cohen, B Boland, B Frohm, E Thulin, ...
Journal: JOURNAL OF NEUROCHEMISTRY 125

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Atomic structure and hierarchical assembly of a cross-β amyloid fibril
Authors: AWP Fitzpatrick, GT Debelouchina, MJ Bayro, DK Clare, MA Caporini, ...
Journal: Proceedings of the National Academy of Sciences 110 (14)

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Electrostatic effects in filamentous protein aggregation
Authors: AK Buell, P Hung, X Salvatella, ME Welland, CM Dobson, TPJ Knowles
Journal: Biophysical journal 104 (5)

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Amyloid Self Assembly
Authors: T Knowles
Journal: APS March Meeting Abstracts 2013

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Understanding the mechanisms of secondary nucleation for protein aggregation: an analytical approach
Authors: T Michaels, TPJ Knowles
Journal: APS March Meeting Abstracts 2013

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The kinetics and mechanisms of amyloid formation
Authors: SIA Cohen, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: Amyloid Fibrils and Prefibrillar Aggregates: Molecular and Biological …

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Peptide nanofibrils boost retroviral gene transfer and provide a rapid means for concentrating viruses
Authors: M Yolamanova, C Meier, AK Shaytan, V Vas, CW Bertoncini, F Arnold, ...
Journal: Nature nanotechnology 8 (2)

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Influence of specific HSP70 domains on fibril formation of the
Authors: GWJ Welland, S Perrett, LSI Cusack, H Zhang, TPJ Knowles, CM Dobson, ...
Journal: 

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2012

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Connecting macroscopic observables and microscopic assembly events in amyloid formation using coarse grained simulations
Authors: NS Bieler, TPJ Knowles, D Frenkel, R Vácha
Journal: Public Library of Science 8 (10)

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Twisting transition between crystalline and fibrillar phases of aggregated peptides
Authors: TPJ Knowles, A De Simone, AW Fitzpatrick, A Baldwin, S Meehan, ...
Journal: Physical Review Letters 109 (15)

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Highly Non-linear Microfluidic Resistor Elements for Flow Rate-dependent Addressing of Microchannels
Authors: L Rajah, DA White, TPJ Knowles
Journal: International Journal of Nonlinear Sciences and Numerical Simulation 13 (5 …

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Fluctuations in water, the hydrophobic effect and self-assembly
Authors: PS Varilly, AJ Patel, SN Jamadagni, H Acharya, MF Hagan, S Garde, ...
Journal: ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 244

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From macroscopic measurements to microscopic mechanisms of protein aggregation
Authors: SIA Cohen, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: Journal of molecular biology 421 (2-3)

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Selenium-enhanced electron microscopic imaging of different aggregate forms of a segment of the amyloid β peptide in cells
Authors: EK McGuire, M Motskin, B Bolognesi, SD Bergin, TPJ Knowles, J Skepper, ...
Journal: ACS nano 6 (6)

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Direct observation of the interconversion of normal and toxic forms of α-synuclein
Authors: N Cremades, SIA Cohen, E Deas, AY Abramov, AY Chen, A Orte, ...
Journal: Cell 149 (5)

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Detailed analysis of the energy barriers for amyloid fibril growth
Authors: AK Buell, A Dhulesia, DA White, TPJ Knowles, CM Dobson, ME Welland
Journal: Angewandte Chemie International Edition 51 (21)

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Analyse der Energiebarrieren für das Wachstum von Amyloidfibrillen
Authors: AK Buell, A Dhulesia, DA White, TPJ Knowles, CM Dobson, ME Welland
Journal: Angewandte Chemie 21 (124)

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Role of elongation and secondary pathways in S6 amyloid fibril growth
Authors: N Lorenzen, SIA Cohen, SB Nielsen, TW Herling, G Christiansen, ...
Journal: Biophysical journal 102 (9)

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Amyloid growth: combining experiment and kinetic theory
Authors: T Knowles, S Cohen, M Vendruscolo, C Dobson
Journal: APS March Meeting Abstracts 2012

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The Mechanisms of Aberrant Protein Aggregation
Authors: S Cohen, M Vendruscolo, C Dobson, T Knowles
Journal: APS March Meeting Abstracts 2012

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An energy landscape approach to protein aggregation
Authors: A Buell, T Knowles
Journal: APS March Meeting Abstracts 2012

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Scaling exponents report on changes in the mechanism of filamentous growth
Authors: L Rajah, S Cohen, S Linse, E Hellstrand, C Dobson, T Knowles
Journal: APS March Meeting Abstracts 2012

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Self-Assembly of Patchy Spherocylinders
Authors: R Vácha, NS Bieler, TPJ Knowles, D Frenkel
Journal: 

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2011

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Protein solubility and protein homeostasis: a generic view of protein misfolding disorders
Authors: M Vendruscolo, TPJ Knowles, CM Dobson
Journal: Cold Spring Harbor perspectives in biology 3 (12)

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Inversion of the balance between hydrophobic and hydrogen bonding interactions in protein folding and aggregation
Authors: AW Fitzpatrick, TPJ Knowles, CA Waudby, M Vendruscolo, CM Dobson
Journal: PLoS computational biology 7 (10)

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Binding of the molecular chaperone αB-crystallin to Aβ amyloid fibrils inhibits fibril elongation
Authors: SL Shammas, CA Waudby, S Wang, AK Buell, TPJ Knowles, H Ecroyd, ...
Journal: Biophysical journal 101 (7)

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Metastability of native proteins and the phenomenon of amyloid formation
Authors: AJ Baldwin, TPJ Knowles, GG Tartaglia, AW Fitzpatrick, GL Devlin, ...
Journal: Journal of the American Chemical Society 133 (36)

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Nucleated polymerisation in the presence of pre-formed seed filaments
Authors: SIA Cohen, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: International journal of molecular sciences 12 (9)

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Observation of spatial propagation of amyloid assembly from single nuclei
Authors: TPJ Knowles, DA White, AR Abate, JJ Agresti, SIA Cohen, RA Sperling, ...
Journal: Proceedings of the National Academy of Sciences 108 (36)

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Nucleated polymerization with secondary pathways. II. Determination of self-consistent solutions to growth processes described by non-linear master equations
Authors: SIA Cohen, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: The Journal of chemical physics 135 (6)

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Nucleated polymerization with secondary pathways. III. Equilibrium behavior and oligomer populations
Authors: SIA Cohen, M Vendruscolo, CM Dobson, TPJ Knowles
Journal: The Journal of chemical physics 135 (6)

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Nucleated polymerization with secondary pathways. I. Time evolution of the principal moments
Authors: SIA Cohen, M Vendruscolo, ME Welland, CM Dobson, EM Terentjev, ...
Journal: The Journal of chemical physics 135 (6)

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Conserved C-terminal charge exerts a profound influence on the aggregation rate of α-synuclein
Authors: K Levitan, D Chereau, SIA Cohen, TPJ Knowles, CM Dobson, AL Fink, ...
Journal: Journal of molecular biology 411 (2)

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Kinetics of protein aggregation
Authors: T Knowles, M Vendruscolo, C Dobson
Journal: EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 40

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Direct observation of the interconversion of normal and pathogenic forms of alpha-synuclein
Authors: N Cremades, SIA Cohen, AY Chen, A Orte, M Sandal, RW Clarke, ...
Journal: European Biophysics Journal with Biophysics Letters 40

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Nanomechanics of functional and pathological amyloid materials
Authors: TPJ Knowles, MJ Buehler
Journal: Nature nanotechnology 6 (8)

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P4‐316: Stabilization of neurotoxic Alzheimer amyloid‐beta oligomers by protein engineering
Authors: A Dubnovitsky, A Sandberg, L Luheshi, S Söllvander, TP de Barros, ...
Journal: Alzheimer's & Dementia 7

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Perturbation of the stability of amyloid fibrils through alteration of electrostatic interactions
Authors: SL Shammas, TPJ Knowles, AJ Baldwin, CE MacPhee, ME Welland, ...
Journal: Biophysical journal 100 (11)

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Population of nonnative states of lysozyme variants drives amyloid fibril formation
Authors: AK Buell, A Dhulesia, MF Mossuto, N Cremades, JR Kumita, M Dumoulin, ...
Journal: Journal of the American Chemical Society 133 (20)

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Relationship between prion propensity and the rates of individual molecular steps of fibril assembly
Authors: YQ Wang, AK Buell, XY Wang, ME Welland, CM Dobson, TPJ Knowles, ...
Journal: Journal of Biological Chemistry 286 (14)

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Probing protein aggregation with quartz crystal microbalances
Authors: TPJ Knowles, GL Devlin, CM Dobson, ME Welland
Journal: Protein Folding

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Probing small molecule binding to amyloid fibrils
Authors: AK Buell, EK Esbjörner, PJ Riss, DA White, FI Aigbirhio, G Toth, ...
Journal: Physical Chemistry Chemical Physics 13 (45)

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2010

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Interactions between amyloidophilic dyes and their relevance to studies of amyloid inhibitors
Authors: AK Buell, CM Dobson, TPJ Knowles, ME Welland
Journal: Biophysical journal 99 (10)

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Materials based on filamentous peptide-or protein-based structures
Authors: ME Welland, TPJ Knowles, T Oppenheim
Journal: 

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Surface attachment of protein fibrils via covalent modification strategies
Authors: AK Buell, DA White, C Meier, ME Welland, TPJ Knowles, CM Dobson
Journal: The Journal of Physical Chemistry B 114 (34)

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Stabilization of neurotoxic Alzheimer amyloid-β oligomers by protein engineering
Authors: A Sandberg, LM Luheshi, S Söllvander, T Pereira de Barros, B Macao, ...
Journal: Proceedings of the National Academy of Sciences 107 (35)

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Imaging Alzheimer's disease-related protein aggregates in human cells using a selenium label
Authors: EK McGuire, M Motskin, TPJ Knowles, CM Dobson, DW McComb, ...
Journal: Journal of Physics: Conference Series 241 (1)

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An algorithm and experimental protocol to obtain the kinetic parameters of fibrillar growth from a first-principles general model of breakable filament assembly
Authors: SI Cohen, M Sandal, L Rajah, CM Dobson, M Vendruscolo, TPJ Knowles
Journal: FEBS JOURNAL 277

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Frequency factors in a landscape model of filamentous protein aggregation
Authors: AK Buell, JR Blundell, CM Dobson, ME Welland, EM Terentjev, ...
Journal: Physical review letters 104 (22)

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Protein aggregation in crowded environments
Authors: DA White, AK Buell, TPJ Knowles, ME Welland, CM Dobson
Journal: Journal of the American Chemical Society 132 (14)

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Fabrication and characterisation of protein fibril–elastomer composites
Authors: T Oppenheim, TPJ Knowles, SP Lacour, ME Welland
Journal: Acta Biomaterialia 6 (4)

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The interaction of αB-crystallin with mature α-synuclein amyloid fibrils inhibits their elongation
Authors: CA Waudby, TPJ Knowles, GL Devlin, JN Skepper, H Ecroyd, JA Carver, ...
Journal: Biophysical journal 98 (5)

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Nanostructured films from hierarchical self-assembly of amyloidogenic proteins
Authors: TPJ Knowles, TW Oppenheim, AK Buell, DY Chirgadze, ME Welland
Journal: Nature nanotechnology 5 (3)

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Quantitative approaches for characterising fibrillar protein nanostructures
Authors: TPJ Knowles, DA White, CM Dobson, ME Welland
Journal: MRS Online Proceedings Library (OPL) 1274

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Methods and models in neurodegenerative and systemic protein aggregation diseases
Authors: AC Brorsson, JR Kumita, I MacLeod, B Bolognesi, E Speretta, LM Luheshi, ...
Journal: Front. Biosci 15

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2009

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An analytical solution to the kinetics of breakable filament assembly
Authors: TPJ Knowles, CA Waudby, GL Devlin, SIA Cohen, A Aguzzi, ...
Journal: Science 326 (5959)

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Strength of nanotubes, filaments, and nanowires from sonication‐induced scission
Authors: YY Huang, TPJ Knowles, EM Terentjev
Journal: Advanced materials 21 (38‐39)

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Imaging amyloid fibrils within cells using a Se-labelling strategy
Authors: AE Porter, TPJ Knowles, K Muller, S Meehan, E McGuire, J Skepper, ...
Journal: Journal of molecular biology 392 (4)

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Biosensor-based label-free assays of amyloid growth
Authors: DA White, AK Buell, CM Dobson, ME Welland, TPJ Knowles
Journal: FEBS letters 583 (16)

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Position‐dependent electrostatic protection against protein aggregation
Authors: AK Buell, GG Tartaglia, NR Birkett, CA Waudby, M Vendruscolo, ...
Journal: ChemBioChem 10 (8)

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2008

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Chemical and biophysical insights into the propagation of prion strains
Authors: J Falsig, KPR Nilsson, TPJ Knowles, A Aguzzi
Journal: HFSP journal 2 (6)

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Highly specific label-free protein detection from lysed cells using internally referenced microcantilever sensors
Authors: W Shu, S Laurenson, TPJ Knowles, PK Ferrigno, AA Seshia
Journal: Biosensors and Bioelectronics 24 (2)

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Label-free detection of amyloid growth with microcantilever sensors
Authors: TPJ Knowles, W Shu, F Huber, HP Lang, C Gerber, CM Dobson, ...
Journal: Nanotechnology 19 (38)

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Measurement of amyloid fibril length distributions by inclusion of rotational motion in solution NMR diffusion measurements
Authors: AJ Baldwin, SJ Anthony‐Cahill, TPJ Knowles, G Lippens, J Christodoulou, ...
Journal: Angewandte Chemie 120 (18)

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Physical aspects in protein aggregation
Authors: TPJ Knowles
Journal: University of Cambridge

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Measurement of amyloid fibril length distributions by inclusion of rotational motion in solution-state NMR diffusion measurements
Authors: AJ Baldwin, SJ Anthony-Cahill, TPJ Knowles, G Lippens, J Christodoulou, ...
Journal: 

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2007

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Role of intermolecular forces in defining material properties of protein nanofibrils
Authors: TP Knowles, AW Fitzpatrick, S Meehan, HR Mott, M Vendruscolo, ...
Journal: science 318 (5858)

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Characterisation of amyloid fibril formation by small heat-shock chaperone proteins human αA-, αB-and R120G αB-crystallins
Authors: S Meehan, TPJ Knowles, AJ Baldwin, JF Smith, AM Squires, P Clements, ...
Journal: Journal of molecular biology 372 (2)

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Kinetics and thermodynamics of amyloid formation from direct measurements of fluctuations in fibril mass
Authors: TPJ Knowles, W Shu, GL Devlin, S Meehan, S Auer, CM Dobson, ...
Journal: Proceedings of the National Academy of Sciences 104 (24)

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2006

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Analysis of structural order in amyloid fibrils
Authors: TPJ Knowles, JF Smith, GL Devlin, CM Dobson, ME Welland
Journal: Nanotechnology 18 (4)

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Characterization of the nanoscale properties of individual amyloid fibrils
Authors: JF Smith, TPJ Knowles, CM Dobson, CE MacPhee, ME Welland
Journal: Proceedings of the National Academy of Sciences 103 (43)

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Enhanced stability of human prion proteins with two disulfide bridges
Authors: TPJ Knowles, R Zahn
Journal: Biophysical journal 91 (4)

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The component polypeptide chains of bovine insulin nucleate or inhibit aggregation of the parent protein in a conformation-dependent manner
Authors: GL Devlin, TPJ Knowles, A Squires, MG McCammon, SL Gras, ...
Journal: Journal of molecular biology 360 (2)

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Spatial persistence of angular correlations in amyloid fibrils
Authors: TPJ Knowles, JF Smith, A Craig, CM Dobson, ME Welland
Journal: Physical review letters 96 (23)

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Inverse Transition of Magnetic Domain Patterns in Ultrathin Fe Films on Cu (001): A Quantitative Analysis
Authors: O Portmann, A Vindigni, T Knowles, A Vaterlaus, D Pescia
Journal: APS March Meeting Abstracts

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2005

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Excitations with negative dispersion in a spin vortex
Authors: M Buess, TPJ Knowles, R Höllinger, T Haug, U Krey, D Weiss, D Pescia, ...
Journal: Physical Review B 71 (10)

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2004

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Non Linear Aspect of Ultrathin Film Magnetism
Authors: D Pescia
Journal: 

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Phase-resolved pulsed precessional motion at a Schottky barrier
Authors: M Buess, TPJ Knowles, U Ramsperger, D Pescia, CH Back
Journal: Physical Review B 69 (17)

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An inverse transition of magnetic domain patterns in ultrathin Fe films on Cu (001)
Authors: O Portmann, T Knowles, A Vaterlaus, D Pescia
Journal: APS March Meeting Abstracts 2004

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Metallic wires on the nanometer scale: fabrication and electronic transport
Authors: T Knowles, U Ramsperger, A Vaterlaus, U Maier, D Pescia
Journal: APS March Meeting Abstracts 2004

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